RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSOTSG00005002904 | Gene ID |
|
Accession |
- |
Symbol |
|
Alias |
- |
Full Name |
small nuclear ribonucleoprotein polypeptide F |
Status |
Confidence |
Length |
10727 bases |
Strand |
Plus strand |
Position |
15 : 4053250 - 4063976 |
RNA binding domain |
LSM |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSOTSP00005005044 |
LSM |
PF01423 |
6.2e-20 |
1 |
ENSOTSP00005005037 |
LSM |
PF01423 |
6.3e-10 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
ENSOTST00005005615 |
1022 |
97aa |
ENSOTSP00005005037 |
- |
ENSOTST00005005622 |
2827 |
89aa |
ENSOTSP00005005044 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005021335 | 76.6667 | 75 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 47.4227 | 46.3918 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 97.9381 | 97.9381 | oncorhynchus_kisutch | ENSOKIP00005053162 | 97.9381 | 97.9381 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 87.6289 | 86.5979 | salmo_salar | ENSSSAP00000121937 | 85 | 84 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 46.3918 | 43.299 | haplochromis_burtoni | ENSHBUP00000025889 | 75 | 70 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 45.3608 | 43.299 | chrysemys_picta_bellii | ENSCPBP00000002420 | 84.6154 | 80.7692 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 45.3608 | 43.299 | crocodylus_porosus | ENSCPRP00005027578 | 80 | 76.3636 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 59.7938 | 50.5155 | cercocebus_atys | ENSCATP00000000634 | 46.0317 | 38.8889 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 59.7938 | 50.5155 | papio_anubis | ENSPANP00000035299 | 45.6693 | 38.5827 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 59.7938 | 50.5155 | mandrillus_leucophaeus | ENSMLEP00000018707 | 45.6693 | 38.5827 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 59.7938 | 50.5155 | macaca_nemestrina | ENSMNEP00000012973 | 45.6693 | 38.5827 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 61.8557 | 51.5464 | pan_paniscus | ENSPPAP00000000818 | 47.2441 | 39.3701 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 51.5464 | 36.0825 | vulpes_vulpes | ENSVVUP00000004016 | 66.6667 | 46.6667 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 61.8557 | 51.5464 | pan_troglodytes | ENSPTRP00000009036 | 47.2441 | 39.3701 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 49.4845 | 35.0515 | canis_lupus_familiaris | ENSCAFP00845021176 | 39.0244 | 27.6423 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 51.5464 | 45.3608 | capra_hircus | ENSCHIP00000017178 | 73.5294 | 64.7059 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 41.2371 | 28.866 | monodelphis_domestica | ENSMODP00000042640 | 58.8235 | 41.1765 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 47.4227 | 46.3918 | bos_grunniens | ENSBGRP00000011183 | 54.7619 | 53.5714 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 46.3918 | 43.299 | otolemur_garnettii | ENSOGAP00000012832 | 84.9057 | 79.2453 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 38.1443 | 30.9278 | takifugu_rubripes | ENSTRUP00000038228 | 50.6849 | 41.0959 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 45.3608 | 38.1443 | phascolarctos_cinereus | ENSPCIP00000022671 | 62.8571 | 52.8571 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 43.299 | 43.299 | poecilia_formosa | ENSPFOP00000021005 | 91.3043 | 91.3043 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 41.2371 | 30.9278 | sciurus_vulgaris | ENSSVLP00005031370 | 61.5385 | 46.1538 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 60.8247 | 50.5155 | rhinopithecus_roxellana | ENSRROP00000013649 | 46.4567 | 38.5827 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 59.7938 | 50.5155 | rhinopithecus_bieti | ENSRBIP00000009873 | 45.6693 | 38.5827 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 44.3299 | 38.1443 | podarcis_muralis | ENSPMRP00000023901 | 78.1818 | 67.2727 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 73.1959 | 73.1959 | hucho_hucho | ENSHHUP00000053761 | 74.7368 | 74.7368 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 62.8866 | 53.6082 | nomascus_leucogenys | ENSNLEP00000035197 | 48.4127 | 41.2698 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 44.3299 | 32.9897 | canis_lupus_dingo | ENSCAFP00020018190 | 37.3913 | 27.8261 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 45.3608 | 44.3299 | chelonoidis_abingdonii | ENSCABP00000028144 | 74.5763 | 72.8814 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 49.4845 | 46.3918 | gopherus_evgoodei | ENSGEVP00005002119 | 47.5248 | 44.5545 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 42.268 | 40.2062 | hippocampus_comes | ENSHCOP00000022596 | 63.0769 | 60 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 51.5464 | 45.3608 | oryzias_sinensis | ENSOSIP00000030044 | 58.8235 | 51.7647 |
ENSOTSG00005002904 | oncorhynchus_tshawytscha | ENSOTSP00005005037 | 43.299 | 36.0825 | peromyscus_maniculatus_bairdii | ENSPEMP00000027546 | 64.6154 | 53.8462 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |