| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSOTSG00005001392 | Gene ID |
112256604 |
Accession |
- |
| Symbol |
srrm1 |
Alias |
- |
Full Name |
serine/arginine repetitive matrix protein 1-like |
| Status |
Confidence |
Length |
24420 bases |
Strand |
Plus strand |
| Position |
8 : 50312932 - 50337351 |
RNA binding domain |
PWI |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSOTSP00005002511 |
PWI |
PF01480 |
2.1e-29 |
1 |
| ENSOTSP00005002502 |
PWI |
PF01480 |
2.6e-29 |
1 |
| ENSOTSP00005002509 |
PWI |
PF01480 |
2.6e-29 |
1 |
| ENSOTSP00005002505 |
PWI |
PF01480 |
2.7e-29 |
1 |
| ENSOTSP00005002498 |
PWI |
PF01480 |
2.7e-29 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| srrm1-201 |
ENSOTST00005002776 |
5465 |
870aa |
ENSOTSP00005002498 |
| srrm1-202 |
ENSOTST00005002780 |
5396 |
847aa |
ENSOTSP00005002502 |
| srrm1-203 |
ENSOTST00005002783 |
5389 |
814aa |
ENSOTSP00005002505 |
| srrm1-204 |
ENSOTST00005002787 |
5102 |
856aa |
ENSOTSP00005002509 |
| srrm1-205 |
ENSOTST00005002789 |
2034 |
677aa |
ENSOTSP00005002511 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005021998 | 88.6336 | 86.3362 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 84.2529 | 82.069 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 37.4713 | 27.1264 | caenorhabditis_elegans | F28D9.1.1 | 54.2429 | 39.2679 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 71.6092 | 65.1724 | danio_rerio | ENSDARP00000124762 | 69.5312 | 63.2812 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 72.5287 | 65.977 | carassius_auratus | ENSCARP00000114160 | 70.2673 | 63.9198 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 74.5977 | 68.3908 | carassius_auratus | ENSCARP00000127567 | 64.0039 | 58.6785 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 71.3793 | 64.4828 | ictalurus_punctatus | ENSIPUP00000024898 | 77.5281 | 70.0375 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 67.8161 | 62.069 | electrophorus_electricus | ENSEEEP00000044397 | 76.0309 | 69.5876 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 88.7356 | 85.977 | esox_lucius | ENSELUP00000002003 | 91.7955 | 88.9417 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 96.4368 | 95.6322 | oncorhynchus_kisutch | ENSOKIP00005100195 | 97.219 | 96.4079 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 99.5402 | 99.3103 | oncorhynchus_mykiss | ENSOMYP00000094307 | 99.5402 | 99.3103 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 92.5287 | 92.069 | salmo_salar | ENSSSAP00000072989 | 97.9319 | 97.4453 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 94.9425 | 94.5977 | salmo_trutta | ENSSTUP00000110134 | 87.039 | 86.7229 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 73.6782 | 66.092 | poecilia_reticulata | ENSPREP00000003793 | 76.4005 | 68.534 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 77.1264 | 70.3448 | xiphophorus_maculatus | ENSXMAP00000034250 | 77.8422 | 70.9977 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 70.9195 | 65.2874 | cyclopterus_lumpus | ENSCLMP00005006083 | 79.7158 | 73.385 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 78.3908 | 72.2989 | oreochromis_niloticus | ENSONIP00000010331 | 78.6621 | 72.549 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 69.0805 | 63.3333 | haplochromis_burtoni | ENSHBUP00000033450 | 76.6582 | 70.2806 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 79.6552 | 72.9885 | sparus_aurata | ENSSAUP00010036820 | 79.4725 | 72.8211 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 72.5287 | 67.1264 | lates_calcarifer | ENSLCAP00010025293 | 79.6717 | 73.7374 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 53.908 | 42.5287 | pan_paniscus | ENSPPAP00000027369 | 60.9883 | 48.1144 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 52.069 | 41.3793 | pan_troglodytes | ENSPTRP00000067759 | 61.2991 | 48.7145 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 49.4253 | 41.4943 | ochotona_princeps | ENSOPRP00000012061 | 48.2604 | 40.5163 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.4943 | 75.977 | dicentrarchus_labrax | ENSDLAP00005001422 | 82.1553 | 76.5933 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 77.8161 | 70.1149 | takifugu_rubripes | ENSTRUP00000005845 | 79.3669 | 71.5123 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 73.908 | 66.2069 | oryzias_melastigma | ENSOMEP00000012648 | 77.845 | 69.7337 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.2644 | 75.2874 | seriola_dumerili | ENSSDUP00000017738 | 81.9235 | 75.898 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 66.8966 | 59.6552 | pygocentrus_nattereri | ENSPNAP00000018511 | 77.8075 | 69.385 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 72.9885 | 64.9425 | poecilia_latipinna | ENSPLAP00000022314 | 78.9801 | 70.2736 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 72.9885 | 64.9425 | poecilia_latipinna | ENSPLAP00000019705 | 78.9801 | 70.2736 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 77.5862 | 69.7701 | poecilia_formosa | ENSPFOP00000003771 | 78.3972 | 70.4994 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 77.4713 | 69.4253 | poecilia_formosa | ENSPFOP00000022512 | 77.4713 | 69.4253 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 58.6207 | 54.2529 | scophthalmus_maximus | ENSSMAP00000015213 | 79.6875 | 73.75 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.2644 | 75.5172 | labrus_bergylta | ENSLBEP00000018116 | 82.1138 | 76.3066 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.954 | 75.8621 | cottoperca_gobio | ENSCGOP00000039106 | 83.0035 | 76.8335 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 97.2414 | 97.0115 | hucho_hucho | ENSHHUP00000063760 | 88.6792 | 88.4696 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 73.5632 | 66.2069 | tetraodon_nigroviridis | ENSTNIP00000020027 | 77.7643 | 69.9878 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.2644 | 75.1724 | mastacembelus_armatus | ENSMAMP00000015180 | 81.9235 | 75.7822 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 74.7126 | 68.7356 | gasterosteus_aculeatus | ENSGACP00000009631 | 75.3187 | 69.2932 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 77.7011 | 70.6897 | nothobranchius_furzeri | ENSNFUP00015031083 | 78.6047 | 71.5116 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 77.8161 | 71.2644 | cynoglossus_semilaevis | ENSCSEP00000000132 | 79.4601 | 72.77 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 65.5172 | 60.1149 | betta_splendens | ENSBSLP00000036607 | 82.1326 | 75.3602 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.3793 | 75.7471 | amphiprion_ocellaris | ENSAOCP00000016773 | 82.1346 | 76.4501 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.0345 | 75.2874 | seriola_lalandi_dorsalis | ENSSLDP00000016091 | 81.5972 | 75.8102 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 75.5172 | 67.931 | paramormyrops_kingsleyae | ENSPKIP00000025372 | 74.8292 | 67.3121 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.4943 | 75.4023 | larimichthys_crocea | ENSLCRP00005043937 | 82.1553 | 76.0139 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 68.3908 | 60.5747 | oryzias_javanicus | ENSOJAP00000042586 | 76.7742 | 68 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 78.8506 | 71.3793 | scleropages_formosus | ENSSFOP00015037720 | 79.2148 | 71.709 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 78.046 | 72.7586 | myripristis_murdjan | ENSMMDP00005045449 | 83.8272 | 78.1481 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.2644 | 75.7471 | sander_lucioperca | ENSSLUP00000004648 | 82.4009 | 76.8065 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 75.2874 | 67.8161 | hippocampus_comes | ENSHCOP00000010258 | 79.0109 | 71.1701 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.3793 | 75.0575 | acanthochromis_polyacanthus | ENSAPOP00000000050 | 81.9444 | 75.5787 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.3793 | 75.5172 | amphiprion_percula | ENSAPEP00000026669 | 82.1346 | 76.2181 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 79.6552 | 73.2184 | denticeps_clupeoides | ENSDCDP00000046977 | 81.6254 | 75.0294 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 74.9425 | 68.3908 | sinocyclocheilus_grahami | ENSSGRP00000029666 | 68.9218 | 62.8964 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 72.1839 | 65.6322 | sinocyclocheilus_grahami | ENSSGRP00000051691 | 71.6077 | 65.1083 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 81.1494 | 75.6322 | stegastes_partitus | ENSSPAP00000012517 | 81.713 | 76.1574 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 75.4023 | 68.5057 | cyprinus_carpio_carpio | ENSCCRP00000011485 | 69.6391 | 63.2696 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 75.0575 | 68.3908 | cyprinus_carpio_carpio | ENSCCRP00000011495 | 70.5946 | 64.3243 |
| ENSOTSG00005001392 | oncorhynchus_tshawytscha | ENSOTSP00005002498 | 80.8046 | 73.7931 | anabas_testudineus | ENSATEP00000010911 | 81.7442 | 74.6512 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
