RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005001013	Gene ID	112254528	Accession	-
Symbol	snrpe	Alias	-	Full Name	small nuclear ribonucleoprotein E
Status	Confidence	Length	3197 bases	Strand	Plus strand
Position	7 : 55556998 - 55560194	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005001745	LSM	PF01423	5.2e-17	1
ENSOTSP00005001750	LSM	PF01423	2.2e-16	1
ENSOTSP00005001748	LSM	PF01423	2.2e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
snrpe-201	ENSOTST00005001970	474	92aa	ENSOTSP00005001745
snrpe-202	ENSOTST00005001973	507	84aa	ENSOTSP00005001748
snrpe-203	ENSOTST00005001976	329	83aa	ENSOTSP00005001750

Gene Model

Click here to download ENSOTSG00005001013's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005001013's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005021504	83.871	81.7204	oncorhynchus_tshawytscha	ENSOTSP00005001745	84.7826	82.6087

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	80.4348	64.1304	caenorhabditis_elegans	Y49E10.15.1	82.2222	65.5556
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	91.3043	75	drosophila_melanogaster	FBpp0079182	89.3617	73.4043
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	85.8696	75	ciona_intestinalis	ENSCINP00000030083	87.7778	76.6667
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	97.8261	97.8261	lepisosteus_oculatus	ENSLOCP00000014664	97.8261	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	96.7391	clupea_harengus	ENSCHAP00000001044	96.8085	94.6809
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	97.8261	96.7391	danio_rerio	ENSDARP00000050295	97.8261	96.7391
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	96.7391	carassius_auratus	ENSCARP00000057913	65	63.5714
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	carassius_auratus	ENSCARP00000052642	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	96.7391	95.6522	astyanax_mexicanus	ENSAMXP00000045637	96.7391	95.6522
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	95.6522	ictalurus_punctatus	ENSIPUP00000006614	98.913	95.6522
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	electrophorus_electricus	ENSEEEP00000026278	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	100	esox_lucius	ENSELUP00000058086	100	100
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	100	oncorhynchus_kisutch	ENSOKIP00005036021	100	100
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	100	oncorhynchus_kisutch	ENSOKIP00005096843	100	100
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	100	oncorhynchus_mykiss	ENSOMYP00000024809	100	100
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	90.2174	90.2174	salmo_salar	ENSSSAP00000109932	100	100
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	100	salmo_trutta	ENSSTUP00000007703	100	100
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	97.8261	oryzias_latipes	ENSORLP00000029192	100	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	93.4783	91.3043	cyclopterus_lumpus	ENSCLMP00005040028	89.5833	87.5
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	oreochromis_niloticus	ENSONIP00000072391	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	76.087	75	astatotilapia_calliptera	ENSACLP00000036553	98.5916	97.1831
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	sparus_aurata	ENSSAUP00010021142	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	lates_calcarifer	ENSLCAP00010050263	79.1304	78.2609
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	78.2609	68.4783	xenopus_tropicalis	ENSXETP00000107277	82.7586	72.4138
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	67.3913	65.2174	dicentrarchus_labrax	ENSDLAP00005081027	95.3846	92.3077
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	96.7391	96.7391	erpetoichthys_calabaricus	ENSECRP00000006249	96.7391	96.7391
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	oryzias_melastigma	ENSOMEP00000000200	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	neolamprologus_brichardi	ENSNBRP00000020087	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	96.7391	pygocentrus_nattereri	ENSPNAP00000007513	98.913	96.7391
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	89.1304	76.087	ciona_savignyi	ENSCSAVP00000006449	91.1111	77.7778
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	scophthalmus_maximus	ENSSMAP00000029058	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	76.087	73.913	labrus_bergylta	ENSLBEP00000010435	98.5916	95.7747
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	96.7391	labrus_bergylta	ENSLBEP00000013672	98.913	96.7391
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	76.087	75	amphilophus_citrinellus	ENSACIP00000025263	98.5916	97.1831
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	100	hucho_hucho	ENSHHUP00000016493	100	100
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	97.8261	96.7391	mastacembelus_armatus	ENSMAMP00000035012	97.8261	96.7391
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	69.5652	47.8261	saccharomyces_cerevisiae	YOR159C	68.0851	46.8085
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	97.8261	gasterosteus_aculeatus	ENSGACP00000014457	100	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	90.2174	86.9565	cynoglossus_semilaevis	ENSCSEP00000013052	100	96.3855
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	betta_splendens	ENSBSLP00000009925	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	amphiprion_ocellaris	ENSAOCP00000018218	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	seriola_lalandi_dorsalis	ENSSLDP00000019592	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	oryzias_javanicus	ENSOJAP00000039158	65.4676	64.7482
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	97.8261	96.7391	scleropages_formosus	ENSSFOP00015002206	97.8261	96.7391
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	100	97.8261	myripristis_murdjan	ENSMMDP00005000536	100	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	sander_lucioperca	ENSSLUP00000025906	73.9837	73.1707
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	93.4783	hippocampus_comes	ENSHCOP00000015898	98.913	93.4783
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	pundamilia_nyererei	ENSPNYP00000007302	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	acanthochromis_polyacanthus	ENSAPOP00000020517	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	amphiprion_percula	ENSAPEP00000021782	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	denticeps_clupeoides	ENSDCDP00000005997	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	sinocyclocheilus_grahami	ENSSGRP00000078257	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	sinocyclocheilus_grahami	ENSSGRP00000024863	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	stegastes_partitus	ENSSPAP00000021667	98.913	97.8261
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	96.7391	cyprinus_carpio_carpio	ENSCCRP00000091686	98.913	96.7391
ENSOTSG00005001013	oncorhynchus_tshawytscha	ENSOTSP00005001745	98.913	97.8261	anabas_testudineus	ENSATEP00000060191	61.9048	61.2245

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression