RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSOSIG00000022638	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1324 bases	Strand	Minus strand
Position	VHIC01001248.1 : 90039 - 91362	RNA binding domain	Ribonuclease_T2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOSIP00000048035	Ribonuclease_T2	PF00445	9.9e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSOSIT00000050480	859	95aa	ENSOSIP00000048035

Gene Model

Click here to download ENSOSIG00000022638's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOSIG00000022638's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000025889	7.58621	5.51724	oryzias_sinensis	ENSOSIP00000048035	11.5789	8.42105

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	62.1053	46.3158	haplochromis_burtoni	ENSHBUP00000015062	29.9492	22.335
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	56.8421	44.2105	kryptolebias_marmoratus	ENSKMAP00000005763	40	31.1111
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	53.6842	37.8947	amphilophus_citrinellus	ENSACIP00000027397	22.1739	15.6522
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	60	44.2105	labrus_bergylta	ENSLBEP00000034009	33.1395	24.4186
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	58.9474	46.3158	nothobranchius_furzeri	ENSNFUP00015000138	41.791	32.8358
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	61.0526	45.2632	maylandia_zebra	ENSMZEP00005033175	45.3125	33.5938
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	53.6842	42.1053	sander_lucioperca	ENSSLUP00000007424	22.6667	17.7778
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	46.3158	34.7368	salmo_trutta	ENSSTUP00000031911	19.8198	14.8649
ENSOSIG00000022638	oryzias_sinensis	ENSOSIP00000048035	44.2105	32.6316	scleropages_formosus	ENSSFOP00015070660	22.1053	16.3158

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression