RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOSIG00000019164	Gene ID	550390	Accession	-
Symbol	mrm3a	Alias	-	Full Name	mitochondrial rRNA methyltransferase 3a
Status	Confidence	Length	3788 bases	Strand	Minus strand
Position	VHIC01002144.1 : 1344036 - 1347823	RNA binding domain	SpoU_methylase
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOSIP00000038930	SpoU_methylase	PF00588	1.7e-23	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
mrm3a-201	ENSOSIT00000041035	1335	444aa	ENSOSIP00000038930

Gene Model

Click here to download ENSOSIG00000019164's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOSIG00000019164's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOSIG00000019164

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	78.3784	65.7658	fundulus_heteroclitus	ENSFHEP00000002513	77.1619	64.745
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	98.4234	97.0721	oryzias_latipes	ENSORLP00000039093	98.4234	97.0721
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	78.8288	64.6396	xiphophorus_maculatus	ENSXMAP00000019155	77.7778	63.7778
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	76.3513	65.0901	cyclopterus_lumpus	ENSCLMP00005017999	76.1798	64.9438
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	82.4324	70.2703	oreochromis_niloticus	ENSONIP00000016543	80.6167	68.7225
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	80.4054	68.9189	astatotilapia_calliptera	ENSACLP00000008580	77.9476	66.8122
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	79.2793	67.3423	sparus_aurata	ENSSAUP00010001739	77.193	65.5702
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	82.2072	70.7207	haplochromis_burtoni	ENSHBUP00000031380	80.2198	69.011
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	81.982	68.9189	dicentrarchus_labrax	ENSDLAP00005054431	77.9443	65.5246
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	76.8018	64.8649	kryptolebias_marmoratus	ENSKMAP00000025730	78.9352	66.6667
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	81.982	69.3694	neolamprologus_brichardi	ENSNBRP00000026368	80.7095	68.2927
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	78.3784	64.4144	poecilia_formosa	ENSPFOP00000010304	76.652	62.9956
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	90.991	85.8108	oryzias_melastigma	ENSOMEP00000003317	92.8736	87.5862
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	78.6036	66.8919	scophthalmus_maximus	ENSSMAP00000011680	77.2124	65.708
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	78.1532	64.4144	poecilia_latipinna	ENSPLAP00000029116	76.4317	62.9956
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	79.955	67.7928	cottoperca_gobio	ENSCGOP00000053648	76.6739	65.0108
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	80.6306	69.8198	amphilophus_citrinellus	ENSACIP00000010103	79.7327	69.0423
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	79.2793	66.2162	anabas_testudineus	ENSATEP00000032343	76.8559	64.1921
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	78.6036	64.8649	labrus_bergylta	ENSLBEP00000028041	77.0419	63.5762
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	79.7297	65.5405	nothobranchius_furzeri	ENSNFUP00015005313	78.1457	64.2384
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	81.0811	67.3423	amphiprion_ocellaris	ENSAOCP00000031744	78.7746	65.4267
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	71.3964	59.9099	hippocampus_comes	ENSHCOP00000025464	73.7209	61.8605
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	81.982	70.4955	maylandia_zebra	ENSMZEP00005010399	80	68.7912
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	77.9279	65.7658	acanthochromis_polyacanthus	ENSAPOP00000001241	78.4581	66.2132
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	90.0901	84.9099	oryzias_javanicus	ENSOJAP00000042436	91.954	86.6667
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	81.0811	70.2703	stegastes_partitus	ENSSPAP00000029629	78.0911	67.679
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	79.7297	68.9189	pundamilia_nyererei	ENSPNYP00000022263	79.0179	68.3036
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	79.0541	68.6937	pundamilia_nyererei	ENSPNYP00000001283	81.0624	70.4388
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	80.8559	67.1171	seriola_lalandi_dorsalis	ENSSLDP00000013878	77.7056	64.5022
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	80.8559	67.1171	seriola_lalandi_dorsalis	ENSSLDP00000013776	77.7056	64.5022
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	80.4054	68.6937	larimichthys_crocea	ENSLCRP00005009954	80.7692	69.0045
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	78.3784	65.7658	mastacembelus_armatus	ENSMAMP00000027212	77.1619	64.745
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	72.5225	60.1351	cynoglossus_semilaevis	ENSCSEP00000021168	69.697	57.7922
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	81.0811	67.5676	amphiprion_percula	ENSAPEP00000013213	78.7746	65.6455
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	41.8919	25.9009	drosophila_melanogaster	FBpp0074739	45.7002	28.2555
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	68.6937	52.7027	clupea_harengus	ENSCHAP00000007860	65.5914	50.3226
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	67.1171	51.3514	danio_rerio	ENSDARP00000119941	67.2686	51.4673
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	67.5676	50.6757	carassius_auratus	ENSCARP00000103373	70.7547	53.066
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	65.3153	52.4775	astyanax_mexicanus	ENSAMXP00000030246	65.7596	52.8345
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	69.1441	53.1532	ictalurus_punctatus	ENSIPUP00000024817	68.3742	52.5612
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	61.7117	44.1441	electrophorus_electricus	ENSEEEP00000040836	59.5652	42.6087
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	75.2252	63.0631	salmo_trutta	ENSSTUP00000109906	73.2456	61.4035
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	70.9459	58.3333	gadus_morhua	ENSGMOP00000032852	68.1818	56.0606
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	61.2613	47.973	chrysemys_picta_bellii	ENSCPBP00000022048	57.2632	44.8421
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	59.009	44.3694	ornithorhynchus_anatinus	ENSOANP00000015733	60.7889	45.7077
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	60.8108	45.4955	bos_taurus	ENSBTAP00000025502	65.3753	48.9104
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	60.5856	45.7207	anolis_carolinensis	ENSACAP00000015695	66.2562	50
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	63.0631	47.0721	erpetoichthys_calabaricus	ENSECRP00000010754	61.0022	45.5338
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	60.8108	45.4955	bos_indicus_hybrid	ENSBIXP00005009222	65.2174	48.7923
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	65.0901	47.2973	pygocentrus_nattereri	ENSPNAP00000028736	66.2844	48.1651
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	59.2342	44.8198	catagonus_wagneri	ENSCWAP00000002777	64.1463	48.5366
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	76.3513	63.5135	hucho_hucho	ENSHHUP00000060496	71.6702	59.6194
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	60.5856	45.2703	bos_mutus	ENSBMUP00000012631	65.1332	48.6683
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	68.4685	50.2252	sinocyclocheilus_grahami	ENSSGRP00000025969	68.0089	49.8881
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	60.1351	47.7477	salvator_merianae	ENSSMRP00000002334	63.7232	50.5967
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	61.9369	48.4234	chelonoidis_abingdonii	ENSCABP00000030657	65.1659	50.9479
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	70.9459	54.5045	scleropages_formosus	ENSSFOP00015066527	65.0826	50
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	61.7117	47.7477	gopherus_evgoodei	ENSGEVP00005019179	64.7754	50.1182
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	77.027	65.3153	myripristis_murdjan	ENSMMDP00005025823	73.7069	62.5
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	60.5856	45.7207	strigops_habroptila	ENSSHBP00005015715	66.0934	49.8772
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	63.5135	48.1982	terrapene_carolina_triunguis	ENSTMTP00000031711	65.5814	49.7674
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	64.4144	46.3964	leptobrachium_leishanense	ENSLLEP00000041273	67.6123	48.6998
ENSOSIG00000019164	oryzias_sinensis	ENSOSIP00000038930	67.1171	50.4505	cyprinus_carpio_carpio	ENSCCRP00000115315	69.6262	52.3364

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression