RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSOSIG00000013556	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1320 bases	Strand	Plus strand
Position	VHIC01062155.1 : 118 - 1437	RNA binding domain	Ribonuclease_T2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOSIP00000025889	Ribonuclease_T2	PF00445	5.5e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSOSIT00000027299	438	145aa	ENSOSIP00000025889

Gene Model

Click here to download ENSOSIG00000013556's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOSIG00000013556's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOSIG00000013556	oryzias_sinensis	ENSOSIP00000048035	11.5789	8.42105	oryzias_sinensis	ENSOSIP00000025889	7.58621	5.51724

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOSIG00000013556	oryzias_sinensis	ENSOSIP00000025889	63.4483	51.0345	lates_calcarifer	ENSLCAP00010050347	34.0741	27.4074
ENSOSIG00000013556	oryzias_sinensis	ENSOSIP00000025889	54.4828	42.7586	scleropages_formosus	ENSSFOP00015060398	44.8864	35.2273

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression