RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSORLG00000018011	Gene ID	101169735	Accession	-
Symbol	calr3b	Alias	-	Full Name	calreticulin
Status	Confidence	Length	5151 bases	Strand	Plus strand
Position	17 : 30409209 - 30414359	RNA binding domain	Calreticulin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSORLP00000022552	Calreticulin	PF00262	1.3e-81	1
ENSORLP00000022552	Calreticulin	PF00262	1.3e-81	2
ENSORLP00000022553	Calreticulin	PF00262	4.5e-77	1
ENSORLP00000022553	Calreticulin	PF00262	4.5e-77	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSORLT00000022553	4113	412aa	ENSORLP00000022552
-	ENSORLT00000022554	1125	374aa	ENSORLP00000022553

Gene Model

Click here to download ENSORLG00000018011's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSORLG00000018011's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSORLG00000018011	oryzias_latipes	ENSORLP00000003652	86.0241	74.2169	oryzias_latipes	ENSORLP00000022552	86.6505	74.7573
ENSORLG00000018011	oryzias_latipes	ENSORLP00000023250	40.0668	27.379	oryzias_latipes	ENSORLP00000022552	58.2524	39.8058
ENSORLG00000018011	oryzias_latipes	ENSORLP00000002509	31.9946	21.419	oryzias_latipes	ENSORLP00000022552	58.0097	38.835

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.5049	84.7087	fundulus_heteroclitus	ENSFHEP00000026864	90.4077	83.693
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	90.534	79.8544	xiphophorus_maculatus	ENSXMAP00000034683	83.6323	73.7668
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.1748	84.9515	seriola_dumerili	ENSSDUP00000014345	92.1615	83.1354
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.7476	83.7379	cyclopterus_lumpus	ENSCLMP00005041706	89.1509	81.3679
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.5631	82.5243	poecilia_formosa	ENSPFOP00000002156	94.1327	86.7347
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	90.0485	80.8252	acanthochromis_polyacanthus	ENSAPOP00000022002	75.2535	67.5456
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.5631	83.0097	takifugu_rubripes	ENSTRUP00000024065	86.8235	80.4706
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.9903	84.7087	labrus_bergylta	ENSLBEP00000022468	90.8873	83.693
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.0194	82.5243	amphiprion_ocellaris	ENSAOCP00000001900	87.6168	79.4393
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.6602	85.6796	neolamprologus_brichardi	ENSNBRP00000016056	92.1986	83.4515
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.4175	85.4369	haplochromis_burtoni	ENSHBUP00000028911	92.399	83.6105
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.5049	83.9806	lates_calcarifer	ENSLCAP00010036322	88.7059	81.4118
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	93.4466	84.9515	nothobranchius_furzeri	ENSNFUP00015010243	87.6993	79.7267
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.5049	83.0097	sparus_aurata	ENSSAUP00010067607	84.5291	76.6816
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.2621	82.5243	amphiprion_percula	ENSAPEP00000031696	88.0562	79.6253
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	93.6893	84.2233	cyprinodon_variegatus	ENSCVAP00000014845	91.6865	82.4228
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.6602	85.4369	maylandia_zebra	ENSMZEP00005032785	92.1986	83.2151
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	99.7573	98.5437	oryzias_sinensis	ENSOSIP00000040466	99.7573	98.5437
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	85.9223	82.5243	oryzias_melastigma	ENSOMEP00000029153	96.7213	92.8962
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.6602	85.6796	oreochromis_niloticus	ENSONIP00000073655	90.9091	82.2844
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.5049	83.9806	amphilophus_citrinellus	ENSACIP00000010291	92.176	84.5966
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	90.0485	82.767	larimichthys_crocea	ENSLCRP00005030137	85.4839	78.5714
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.1748	84.9515	seriola_lalandi_dorsalis	ENSSLDP00000012590	92.1615	83.1354
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.6602	85.4369	pundamilia_nyererei	ENSPNYP00000009842	92.4171	83.4123
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	92.233	84.466	mastacembelus_armatus	ENSMAMP00000006586	73.2177	67.052
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	92.9612	83.9806	poecilia_latipinna	ENSPLAP00000003318	92.2892	83.3735
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	94.6602	85.4369	astatotilapia_calliptera	ENSACLP00000015702	92.4171	83.4123
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	93.2039	85.4369	betta_splendens	ENSBSLP00000055862	90.7801	83.2151
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	48.7864	41.7476	stegastes_partitus	ENSSPAP00000017954	74.4444	63.7037
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	92.7184	83.4951	poecilia_reticulata	ENSPREP00000018198	91.3876	82.2967
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	90.2913	82.5243	anabas_testudineus	ENSATEP00000031160	86.3109	78.8863
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	90.534	82.767	gasterosteus_aculeatus	ENSGACP00000022325	89.8795	82.1687
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	92.233	84.2233	scophthalmus_maximus	ENSSMAP00000041269	89.6226	81.8396
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	91.0194	81.5534	hippocampus_comes	ENSHCOP00000001490	90.1442	80.7692
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	92.233	83.4951	cynoglossus_semilaevis	ENSCSEP00000024406	89.4118	80.9412
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	73.5437	60.4369	caenorhabditis_elegans	Y38A10A.5.1	76.7089	63.038
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	81.3107	63.5922	petromyzon_marinus	ENSPMAP00000003021	78.4543	61.3583
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	81.7961	72.3301	callorhinchus_milii	ENSCMIP00000044200	81.2048	71.8072
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	85.4369	75.4854	latimeria_chalumnae	ENSLACP00000020782	84.6154	74.7596
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	87.6214	78.1553	lepisosteus_oculatus	ENSLOCP00000004438	84.7418	75.5869
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	84.7087	71.8447	clupea_harengus	ENSCHAP00000004633	78.9593	66.9683
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	88.835	80.3398	danio_rerio	ENSDARP00000135281	87.7698	79.3765
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	87.6214	80.8252	carassius_auratus	ENSCARP00000049111	82.2323	75.8542
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	90.0485	81.7961	carassius_auratus	ENSCARP00000082668	88.5442	80.4296
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	86.165	77.6699	carassius_auratus	ENSCARP00000083241	85.1319	76.7386
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	72.8155	63.3495	carassius_auratus	ENSCARP00000084939	82.6446	71.9008
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.8058	81.068	astyanax_mexicanus	ENSAMXP00000015561	87.4705	78.9598
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.0777	79.8544	ictalurus_punctatus	ENSIPUP00000007845	86.5566	77.5943
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	88.3495	79.8544	electrophorus_electricus	ENSEEEP00000000433	86.8735	78.5203
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	87.6214	77.6699	esox_lucius	ENSELUP00000014024	86.7788	76.9231
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.3204	77.4272	oncorhynchus_kisutch	ENSOKIP00005085718	88.2494	76.4988
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.3204	77.4272	oncorhynchus_mykiss	ENSOMYP00000004384	88.2494	76.4988
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	84.7087	74.0291	salmo_salar	ENSSSAP00000065694	82.8979	72.4466
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	85.9223	75.7282	salmo_trutta	ENSSTUP00000103679	86.9779	76.6585
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.0777	81.3107	gadus_morhua	ENSGMOP00000013388	86.5566	79.0094
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	78.3981	70.3884	erpetoichthys_calabaricus	ENSECRP00000031366	81.3602	73.0479
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	45.3883	29.6117	saccharomyces_cerevisiae	YAL058W	37.251	24.3028
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	86.6505	76.4563	scleropages_formosus	ENSSFOP00015012379	77.4403	68.3297
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	79.3689	71.3592	scleropages_formosus	ENSSFOP00015046845	73.4831	66.0674
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	84.9515	76.699	sinocyclocheilus_grahami	ENSSGRP00000009481	72.314	65.2893
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	86.165	76.4563	sinocyclocheilus_grahami	ENSSGRP00000081943	73.8046	65.4886
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.5631	80.8252	denticeps_clupeoides	ENSDCDP00000025257	87.6485	79.0974
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.5631	80.0971	myripristis_murdjan	ENSMMDP00005028478	87.8571	78.5714
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	85.9223	75.7282	paramormyrops_kingsleyae	ENSPKIP00000012641	85.9223	75.7282
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	84.9515	73.0583	paramormyrops_kingsleyae	ENSPKIP00000028736	84.3373	72.5301
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	88.835	77.1845	oncorhynchus_tshawytscha	ENSOTSP00005037564	87.1429	75.7143
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	89.3204	78.8835	pygocentrus_nattereri	ENSPNAP00000035367	76.0331	67.1488
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	88.835	77.6699	hucho_hucho	ENSHHUP00000078118	79.5652	69.5652
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	86.8932	78.8835	cyprinus_carpio_carpio	ENSCCRP00000157544	85.4415	77.5656
ENSORLG00000018011	oryzias_latipes	ENSORLP00000022552	87.6214	78.6408	cyprinus_carpio_carpio	ENSCCRP00000151267	85.7482	76.9596

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression