RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSOMYG00000019776	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2460 bases	Strand	Plus strand
Position	21 : 16740460 - 16742919	RNA binding domain	rRNA_processing
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOMYP00000042844	rRNA_processing	PF08524	2.3e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSOMYT00000046717	750	249aa	ENSOMYP00000042840
-	ENSOMYT00000046721	753	250aa	ENSOMYP00000042844

Gene Model

Click here to download ENSOMYG00000019776's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOMYG00000019776's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOMYG00000019776

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOMYG00000019776	oncorhynchus_mykiss	ENSOMYP00000042844	42.8	24	anolis_carolinensis	ENSACAP00000014417	49.0826	27.5229
ENSOMYG00000019776	oncorhynchus_mykiss	ENSOMYP00000042844	53.6	39.2	acanthochromis_polyacanthus	ENSAPOP00000011280	51.7375	37.8378
ENSOMYG00000019776	oncorhynchus_mykiss	ENSOMYP00000042844	53.6	39.2	acanthochromis_polyacanthus	ENSAPOP00000033356	51.7375	37.8378
ENSOMYG00000019776	oncorhynchus_mykiss	ENSOMYP00000042844	37.2	23.6	salvator_merianae	ENSSMRP00000013245	51.3812	32.5967
ENSOMYG00000019776	oncorhynchus_mykiss	ENSOMYP00000042844	53.6	40.4	nothobranchius_furzeri	ENSNFUP00015005242	50.9506	38.403

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression