RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOMEG00000022050	Gene ID	112147456	Accession	-
Symbol		Alias	-	Full Name	pre-mRNA processing factor 38B
Status	Confidence	Length	5751 bases	Strand	Minus strand
Position	NVQA01000011.1 : 10708438 - 10714188	RNA binding domain	PRP38
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOMEP00000020202	PRP38	PF03371	9.7e-51	1
ENSOMEP00000020167	PRP38	PF03371	3.2e-42	1
ENSOMEP00000020187	PRP38	PF03371	4.1e-42	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSOMET00000029626	2065	458aa	ENSOMEP00000020202
-	ENSOMET00000029648	1201	184aa	ENSOMEP00000020187
-	ENSOMET00000029590	556	171aa	ENSOMEP00000020167

Gene Model

Click here to download ENSOMEG00000022050's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOMEG00000022050's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000031467	49.1909	32.0388	oryzias_melastigma	ENSOMEP00000020202	33.1878	21.6157

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	95.4148	88.8646	xiphophorus_maculatus	ENSXMAP00000035329	94.3845	87.905
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	98.0349	95.6332	oryzias_latipes	ENSORLP00000019555	98.0349	95.6332
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	94.7598	87.9913	poecilia_reticulata	ENSPREP00000023113	93.7365	87.041
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	94.7598	88.2096	oreochromis_niloticus	ENSONIP00000050131	94.1432	87.6356
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	94.3231	85.5895	cyclopterus_lumpus	ENSCLMP00005011842	89.441	81.1594
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	93.8865	85.8079	sparus_aurata	ENSSAUP00010040575	89.9582	82.2176
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	39.9563	37.5546	cyprinodon_variegatus	ENSCVAP00000004241	87.9808	82.6923
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	35.8079	35.3712	neolamprologus_brichardi	ENSNBRP00000025145	97.0414	95.858
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	93.6681	85.1528	takifugu_rubripes	ENSTRUP00000029701	93.0586	84.5987
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	35.8079	35.3712	amphilophus_citrinellus	ENSACIP00000021200	95.3488	94.186
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	96.2882	88.8646	kryptolebias_marmoratus	ENSKMAP00000007358	93.6306	86.4119
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	95.4148	84.7162	cynoglossus_semilaevis	ENSCSEP00000023560	94.7939	84.1649
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	94.7598	87.5546	nothobranchius_furzeri	ENSNFUP00015048265	94.5534	87.3638
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	80.3493	74.8908	tetraodon_nigroviridis	ENSTNIP00000018361	90.8642	84.6914
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	96.2882	89.3013	betta_splendens	ENSBSLP00000037420	96.2882	89.3013
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	96.9432	89.738	lates_calcarifer	ENSLCAP00010034033	94.8718	87.8205
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	95.4148	89.083	poecilia_formosa	ENSPFOP00000003951	94.3845	88.1209
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	94.1048	86.8996	cottoperca_gobio	ENSCGOP00000022858	90.7368	83.7895
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	92.5764	82.9694	hippocampus_comes	ENSHCOP00000000290	92.9825	83.3333
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	37.7729	36.0262	seriola_dumerili	ENSSDUP00000022794	94.0217	89.6739
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	37.7729	36.0262	sander_lucioperca	ENSSLUP00000005237	92.5134	88.2353
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	39.9563	38.2096	oryzias_javanicus	ENSOJAP00000049891	88.835	84.9515
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	95.1965	88.8646	poecilia_latipinna	ENSPLAP00000015832	94.1685	87.905
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	96.5066	89.738	anabas_testudineus	ENSATEP00000020781	95.2586	88.5776
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	98.2533	96.0699	oryzias_sinensis	ENSOSIP00000001412	98.2533	96.0699
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	36.8996	35.5895	scophthalmus_maximus	ENSSMAP00000002900	91.8478	88.587
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	96.9432	90.1747	seriola_lalandi_dorsalis	ENSSLDP00000030522	95.0749	88.4368
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	41.2664	28.3843	caenorhabditis_elegans	Y108G3AL.2.2	57.7982	39.7554
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	55.4585	43.2314	drosophila_melanogaster	FBpp0073588	63.8191	49.7487
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	27.9476	25.5459	petromyzon_marinus	ENSPMAP00000007872	82.0513	75
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	67.4672	callorhinchus_milii	ENSCMIP00000022121	70.9193	57.9737
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	69.869	latimeria_chalumnae	ENSLACP00000017612	70	59.2593
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	30.131	29.476	carassius_auratus	ENSCARP00000098218	87.3418	85.443
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.6245	73.7991	carassius_auratus	ENSCARP00000105637	81.4894	71.9149
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.6245	73.7991	carassius_auratus	ENSCARP00000011389	81.4894	71.9149
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	72.7074	64.4105	astyanax_mexicanus	ENSAMXP00000052001	56.5365	50.0849
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	81.2227	68.7773	electrophorus_electricus	ENSEEEP00000030981	74.8491	63.3803
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	87.7729	77.9476	esox_lucius	ENSELUP00000032488	76.1364	67.6136
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.2795	75.7642	oncorhynchus_mykiss	ENSOMYP00000058010	75.0973	67.5097
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.9345	74.2358	oncorhynchus_mykiss	ENSOMYP00000036821	80.7054	70.5394
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	85.1528	74.0175	oncorhynchus_kisutch	ENSOKIP00005088586	82.4524	71.6702
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.7162	76.2009	oncorhynchus_kisutch	ENSOKIP00005059831	78.3838	70.5051
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.9345	76.6376	salmo_salar	ENSSSAP00000082066	77.336	69.7813
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	85.5895	75.3275	salmo_salar	ENSSSAP00000125318	81.4969	71.7256
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.9345	76.6376	salmo_trutta	ENSSTUP00000098239	78.2696	70.6237
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	85.8079	75.3275	salmo_trutta	ENSSTUP00000038714	82.7368	72.6316
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	86.2445	76.4192	gadus_morhua	ENSGMOP00000012926	85.3132	75.594
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	78.1659	65.5022	xenopus_tropicalis	ENSXETP00000076418	71.3147	59.761
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	71.6157	chrysemys_picta_bellii	ENSCPBP00000041241	69.3578	60.1835
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	71.3974	sphenodon_punctatus	ENSSPUP00000023119	69.2308	59.8901
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	81.6594	71.6157	laticauda_laticaudata	ENSLLTP00000009577	66.9052	58.6762
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	19.214	16.5939	notechis_scutatus	ENSNSUP00000008456	53.3333	46.0606
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	81.441	70.524	pseudonaja_textilis	ENSPTXP00000006910	66.4884	57.5758
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.4061	72.4891	gallus_gallus	ENSGALP00010016566	69.5811	60.4736
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.4061	71.179	serinus_canaria	ENSSCAP00000016233	69.9634	59.707
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.1878	71.3974	parus_major	ENSPMJP00000026405	69.7802	59.8901
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.7511	70.7424	ornithorhynchus_anatinus	ENSOANP00000051368	67.0796	57.3451
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	58.7336	50.4367	choloepus_hoffmanni	ENSCHOP00000007932	85.3968	73.3333
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	37.1179	31.441	choloepus_hoffmanni	ENSCHOP00000006042	37.694	31.929
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	52.6201	43.8865	notamacropus_eugenii	ENSMEUP00000004437	53.7946	44.8661
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	72.4891	63.3188	echinops_telfairi	ENSETEP00000011906	74.1071	64.7321
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	34.0611	32.7511	macaca_fascicularis	ENSMFAP00000010385	82.5397	79.3651
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.9694	72.0524	canis_lupus_familiaris	ENSCAFP00845011381	61.6883	53.5714
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.1878	72.2707	ailuropoda_melanoleuca	ENSAMEP00000004606	61.7504	53.6467
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.9694	71.8341	tursiops_truncatus	ENSTTRP00000006131	69.8529	60.4779
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.9694	71.8341	delphinapterus_leucas	ENSDLEP00000018649	69.7248	60.367
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	74.4541	65.0655	physeter_catodon	ENSPCTP00005006461	70.3093	61.4433
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.7511	71.6157	balaenoptera_musculus	ENSBMSP00010009696	69.6691	60.2941
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	78.3843	67.6856	sus_scrofa	ENSSSCP00000059309	68.251	58.9354
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.3144	71.3974	capra_hircus	ENSCHIP00000029107	69.4291	60.221
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.3144	71.3974	bos_taurus	ENSBTAP00000055594	69.4291	60.221
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.3144	71.3974	ovis_aries_rambouillet	ENSOARP00020005996	69.4291	60.221
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.7511	71.6157	camelus_dromedarius	ENSCDRP00005004728	69.5413	60.1835
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	60.6987	49.5633	ochotona_princeps	ENSOPRP00000012347	51.4815	42.037
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	81.441	69.4323	mus_spicilegus	ENSMSIP00000023544	68.9464	58.78
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.7511	69.869	cavia_porcellus	ENSCPOP00000030912	69.7974	58.9319
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.0961	70.0873	rattus_norvegicus	ENSRNOP00000027738	69.3727	59.2251
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	18.9956	17.2489	heterocephalus_glaber_female	ENSHGLP00000033221	63.5037	57.6642
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.7511	71.179	pelodiscus_sinensis	ENSPSIP00000018634	69.5413	59.8165
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.9694	71.8341	monodelphis_domestica	ENSMODP00000002863	69.4698	60.1463
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.9694	73.3624	anolis_carolinensis	ENSACAP00000023291	57.4887	50.8321
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	85.8079	71.3974	erpetoichthys_calabaricus	ENSECRP00000019303	75.7225	63.0058
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	74.4541	63.3188	vicugna_pacos	ENSVPAP00000005150	63.1481	53.7037
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.3144	71.3974	bos_indicus_hybrid	ENSBIXP00005007407	69.4291	60.221
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	75.3275	64.1921	tupaia_belangeri	ENSTBEP00000006484	67.78	57.7603
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.9694	71.8341	phocoena_sinus	ENSPSNP00000012118	69.8529	60.4779
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	53.2751	42.5764	ciona_savignyi	ENSCSAVP00000016029	69.914	55.8739
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	85.3712	73.5808	pygocentrus_nattereri	ENSPNAP00000011801	77.1203	66.4694
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.7511	71.3974	monodon_monoceros	ENSMMNP00015006613	69.6691	60.1103
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.4061	71.3974	taeniopygia_guttata	ENSTGUP00000004723	69.9634	59.8901
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.1878	72.4891	coturnix_japonica	ENSCJPP00005027176	69.3989	60.4736
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.3144	70.7424	otolemur_garnettii	ENSOGAP00000017644	68.9214	59.2322
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.7511	71.8341	catagonus_wagneri	ENSCWAP00000003596	69.4139	60.2564
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	71.8341	terrapene_carolina_triunguis	ENSTMTP00000023973	69.3578	60.367
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	71.8341	terrapene_carolina_triunguis	ENSTMTP00000015706	69.3578	60.367
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	71.6157	moschus_moschiferus	ENSMMSP00000004346	69.6133	60.4052
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	80.786	69.214	moschus_moschiferus	ENSMMSP00000008138	68.7732	58.9219
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	13.3188	12.8821	moschus_moschiferus	ENSMMSP00000018847	65.5914	63.4409
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	77.2926	64.6288	leptobrachium_leishanense	ENSLLEP00000036330	71.371	59.6774
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	72.0524	podarcis_muralis	ENSPMRP00000016076	66.1996	57.7933
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	69.214	scleropages_formosus	ENSSFOP00015017506	68.9781	57.8467
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.4061	70.7424	chinchilla_lanigera	ENSCLAP00000008273	69.708	59.1241
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.0961	71.3974	gopherus_evgoodei	ENSGEVP00005014759	68.9908	60
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.5328	71.6157	cervus_hanglu_yarkandensis	ENSCHYP00000028066	69.6133	60.4052
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	80.786	70.524	paramormyrops_kingsleyae	ENSPKIP00000040265	67.7656	59.1575
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	21.179	18.1223	chelonoidis_abingdonii	ENSCABP00000011993	51.5957	44.1489
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.4061	71.6157	aquila_chrysaetos_chrysaetos	ENSACCP00020013263	69.8355	59.9634
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	74.2358	63.1004	canis_lupus_dingo	ENSCAFP00020013657	66.7976	56.778
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	82.9694	73.1441	hucho_hucho	ENSHHUP00000044629	80.8511	71.2766
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	86.4629	75.9825	denticeps_clupeoides	ENSDCDP00000024824	82.3285	72.3493
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	83.1878	71.6157	strigops_habroptila	ENSSHBP00005016164	69.6526	59.9634
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	80.786	69.6507	naja_naja	ENSNNAP00000005330	53.8573	46.4338
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	20.3057	19.214	sinocyclocheilus_grahami	ENSSGRP00000017391	96.875	91.6667
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.0611	72.9258	sinocyclocheilus_grahami	ENSSGRP00000081505	78.5714	68.1633
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	65.0655	53.4935	sinocyclocheilus_grahami	ENSSGRP00000092311	71.2919	58.6124
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	93.8865	87.3362	myripristis_murdjan	ENSMMDP00005007349	87.7551	81.6327
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.4978	74.6725	cyprinus_carpio_carpio	ENSCCRP00000056619	81.8182	72.3044
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	84.7162	76.2009	oncorhynchus_tshawytscha	ENSOTSP00005033412	78.3838	70.5051
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	81.6594	69.4323	microtus_ochrogaster	ENSMOCP00000023620	69.1312	58.78
ENSOMEG00000022050	oryzias_melastigma	ENSOMEP00000020202	73.3624	60.6987	ficedula_albicollis	ENSFALP00000002785	65.2427	53.9806

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression