RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSOKIG00005009393	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	473 bases	Strand	Minus strand
Position	LG6 : 57864334 - 57864806	RNA binding domain	Spt4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOKIP00005021279	Spt4	PF06093	4.8e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSOKIT00005022634	246	81aa	ENSOKIP00005021279

Gene Model

Click here to download ENSOKIG00005009393's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOKIG00005009393's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOKIG00005009393

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOKIG00005009393	oncorhynchus_kisutch	ENSOKIP00005021279	49.3827	45.679	salmo_trutta	ENSSTUP00000038680	54.7945	50.6849
ENSOKIG00005009393	oncorhynchus_kisutch	ENSOKIP00005021279	56.7901	44.4444	rattus_norvegicus	ENSRNOP00000095333	44.2308	34.6154
ENSOKIG00005009393	oncorhynchus_kisutch	ENSOKIP00005021279	71.6049	60.4938	oncorhynchus_tshawytscha	ENSOTSP00005045552	69.8795	59.0361

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression