| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSOJAG00000006216 | Gene ID |
|
Accession |
- |
| Symbol |
tnrc6c2 |
Alias |
- |
Full Name |
trinucleotide repeat containing adaptor 6C2 |
| Status |
Confidence |
Length |
34489 bases |
Strand |
Minus strand |
| Position |
1 : 26516036 - 26550524 |
RNA binding domain |
RRM_1 , TNRC6-PABC_bdg |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSOJAP00000011725 |
RRM_1 |
PF00076 |
3e-05 |
1 |
| ENSOJAP00000011725 |
TNRC6-PABC_bdg |
PF16608 |
3.1e-27 |
2 |
| ENSOJAP00000012079 |
TNRC6-PABC_bdg |
PF16608 |
1.2e-62 |
1 |
| ENSOJAP00000012059 |
TNRC6-PABC_bdg |
PF16608 |
1.3e-62 |
1 |
| ENSOJAP00000012038 |
TNRC6-PABC_bdg |
PF16608 |
1.4e-62 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ENSOJAT00000012527 |
1026 |
254aa |
ENSOJAP00000011725 |
| - |
ENSOJAT00000012855 |
5279 |
1625aa |
ENSOJAP00000012038 |
| - |
ENSOJAT00000012878 |
5138 |
1578aa |
ENSOJAP00000012059 |
| - |
ENSOJAT00000012900 |
4871 |
1489aa |
ENSOJAP00000012079 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000001539 | 35.0701 | 23.7475 | oryzias_javanicus | ENSOJAP00000012038 | 21.5385 | 14.5846 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000001529 | 20.5955 | 15.8809 | oryzias_javanicus | ENSOJAP00000012038 | 5.10769 | 3.93846 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000016389 | 27.1629 | 19.0913 | oryzias_javanicus | ENSOJAP00000012038 | 34.5846 | 24.3077 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012663 | 13.7536 | 9.74212 | oryzias_javanicus | ENSOJAP00000012038 | 2.95385 | 2.09231 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000006614 | 36.1045 | 18.7648 | oryzias_javanicus | ENSOJAP00000012038 | 9.35385 | 4.86154 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000023327 | 39.5425 | 20.2614 | oryzias_javanicus | ENSOJAP00000012038 | 7.44615 | 3.81538 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000017367 | 32.5942 | 15.0776 | oryzias_javanicus | ENSOJAP00000012038 | 9.04615 | 4.18462 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 69.9077 | 65.0462 | poecilia_reticulata | ENSPREP00000023581 | 73.4324 | 68.3258 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 78.5846 | 71.3231 | fundulus_heteroclitus | ENSFHEP00000003071 | 73.6448 | 66.8397 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 75.0154 | 69.4154 | xiphophorus_maculatus | ENSXMAP00000036125 | 74.9232 | 69.3301 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 96.4308 | 94.1538 | oryzias_latipes | ENSORLP00000030611 | 82.1279 | 80.1887 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 77.4154 | 71.9385 | oreochromis_niloticus | ENSONIP00000022830 | 72.0917 | 66.9914 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 85.1692 | 79.3846 | haplochromis_burtoni | ENSHBUP00000032177 | 74.4486 | 69.3921 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 84.9846 | 79.1385 | astatotilapia_calliptera | ENSACLP00000009463 | 74.3272 | 69.2142 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 64.8615 | 59.6923 | cyclopterus_lumpus | ENSCLMP00005013575 | 69.5251 | 63.9842 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 78.2769 | 72.7385 | lates_calcarifer | ENSLCAP00010053575 | 72.9776 | 67.8141 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 74.8923 | 69.4154 | sparus_aurata | ENSSAUP00010022754 | 73.8919 | 68.4882 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 75.8769 | 70.4 | dicentrarchus_labrax | ENSDLAP00005006954 | 74.7273 | 69.3333 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 6.76923 | 6.46154 | cyprinodon_variegatus | ENSCVAP00000032338 | 28.3505 | 27.0619 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 67.3231 | 61.2308 | takifugu_rubripes | ENSTRUP00000066610 | 69.5929 | 63.2952 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 72.7385 | 68.1231 | kryptolebias_marmoratus | ENSKMAP00000017975 | 74.7156 | 69.9747 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 97.5385 | 96.6154 | oryzias_melastigma | ENSOMEP00000016317 | 82.7676 | 81.9843 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 70.8923 | 65.2308 | poecilia_formosa | ENSPFOP00000011791 | 70.5018 | 64.8715 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 75.6923 | 70.8308 | seriola_dumerili | ENSSDUP00000028753 | 75.1374 | 70.3115 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 68.1846 | 62.1538 | cottoperca_gobio | ENSCGOP00000010683 | 70.3046 | 64.0863 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 73.7846 | 67.8769 | scophthalmus_maximus | ENSSMAP00000024793 | 72.7549 | 66.9296 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 85.9077 | 78.2154 | labrus_bergylta | ENSLBEP00000012112 | 73.204 | 66.6492 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 69.4154 | 64.6769 | amphilophus_citrinellus | ENSACIP00000005922 | 74.4554 | 69.3729 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 75.3231 | 67.3846 | gasterosteus_aculeatus | ENSGACP00000025645 | 68.9189 | 61.6554 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 77.0462 | 71.5077 | anabas_testudineus | ENSATEP00000070765 | 72.4537 | 67.2454 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 6.64615 | 6.4 | acanthochromis_polyacanthus | ENSAPOP00000013376 | 26.6667 | 25.679 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 96.3077 | 94.1538 | oryzias_sinensis | ENSOSIP00000013063 | 81.9801 | 80.1467 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 75.0154 | 69.7231 | pundamilia_nyererei | ENSPNYP00000003303 | 74.5566 | 69.2966 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 75.6308 | 70.8308 | seriola_lalandi_dorsalis | ENSSLDP00000002564 | 75.0764 | 70.3115 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 73.3538 | 68.7385 | amphiprion_percula | ENSAPEP00000000615 | 74.9686 | 70.2516 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 66.2769 | 59.6308 | tetraodon_nigroviridis | ENSTNIP00000006799 | 67.1028 | 60.3738 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 80.6769 | 72.9231 | hippocampus_comes | ENSHCOP00000026677 | 69.734 | 63.0319 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 88.5538 | 83.2615 | stegastes_partitus | ENSSPAP00000017308 | 76.0571 | 71.5116 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 88.0615 | 82.1538 | larimichthys_crocea | ENSLCRP00005033294 | 74.6868 | 69.6764 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 87.2 | 80.6154 | mastacembelus_armatus | ENSMAMP00000002451 | 74.3442 | 68.7303 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 84.9846 | 79.2 | maylandia_zebra | ENSMZEP00005032067 | 74.3272 | 69.268 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 76.4923 | 70.7692 | nothobranchius_furzeri | ENSNFUP00015034042 | 73.9441 | 68.4117 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 69.1692 | 64.3692 | neolamprologus_brichardi | ENSNBRP00000000606 | 74.5358 | 69.3634 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 76.9846 | 70.8308 | sander_lucioperca | ENSSLUP00000059858 | 73.4155 | 67.547 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 78.3385 | 71.5692 | betta_splendens | ENSBSLP00000028731 | 73.2873 | 66.9545 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 88.1846 | 82.7077 | amphiprion_ocellaris | ENSAOCP00000028185 | 75.78 | 71.0735 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 68.3077 | 62.1538 | cynoglossus_semilaevis | ENSCSEP00000004558 | 71.8447 | 65.3722 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 69.4154 | 64.5538 | poecilia_latipinna | ENSPLAP00000005120 | 72.1689 | 67.1145 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 56.6769 | 45.9692 | danio_rerio | ENSDARP00000132648 | 57.205 | 46.3975 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 61.4769 | 50.8923 | carassius_auratus | ENSCARP00000001748 | 58.1829 | 48.1654 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 55.2 | 45.3538 | carassius_auratus | ENSCARP00000058283 | 56.3796 | 46.3231 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 54.5846 | 46.5231 | astyanax_mexicanus | ENSAMXP00000009848 | 58.3169 | 49.7041 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 51.6308 | 42.7077 | ictalurus_punctatus | ENSIPUP00000033885 | 56.4603 | 46.7026 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 0.246154 | 0.184615 | electrophorus_electricus | ENSEEEP00000012938 | 1.55642 | 1.16732 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 63.1385 | 56.5538 | esox_lucius | ENSELUP00000067667 | 56.0044 | 50.1638 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 68.4308 | 60.4308 | oncorhynchus_kisutch | ENSOKIP00005006372 | 56.3895 | 49.7972 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 71.1385 | 61.9692 | oncorhynchus_kisutch | ENSOKIP00005062386 | 56.5558 | 49.2661 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 70.8923 | 61.9077 | oncorhynchus_mykiss | ENSOMYP00000107930 | 56.9451 | 49.7281 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 70.9538 | 62.4 | oncorhynchus_mykiss | ENSOMYP00000123845 | 57.5924 | 50.6493 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 71.2 | 62.7077 | salmo_salar | ENSSSAP00000030509 | 57.4479 | 50.5958 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 56.3077 | 49.5385 | salmo_salar | ENSSSAP00000105150 | 58.8046 | 51.7352 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 71.3231 | 62.6462 | salmo_trutta | ENSSTUP00000105512 | 57.4901 | 50.496 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 65.9077 | 58.3385 | salmo_trutta | ENSSTUP00000040509 | 55.2062 | 48.866 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 57.2308 | 46.2769 | gadus_morhua | ENSGMOP00000052835 | 46.2456 | 37.3943 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 54.7692 | 46.8308 | pygocentrus_nattereri | ENSPNAP00000020014 | 58.7071 | 50.1979 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 55.0154 | 46.0923 | sinocyclocheilus_grahami | ENSSGRP00000039585 | 57.9016 | 48.5104 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 58.9538 | 48.8615 | sinocyclocheilus_grahami | ENSSGRP00000077270 | 57.9202 | 48.0048 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 64.1846 | 55.1385 | oncorhynchus_tshawytscha | ENSOTSP00005050930 | 57.0257 | 48.9885 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 58.0308 | 50.6462 | oncorhynchus_tshawytscha | ENSOTSP00005046225 | 57.5702 | 50.2442 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 59.7538 | 53.2308 | hucho_hucho | ENSHHUP00000012037 | 59.9013 | 53.3621 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 70.8923 | 62.0308 | hucho_hucho | ENSHHUP00000068866 | 58.0938 | 50.8321 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 68.2462 | 62.7692 | myripristis_murdjan | ENSMMDP00005055322 | 73.2013 | 67.3267 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 54.7692 | 45.6 | cyprinus_carpio_carpio | ENSCCRP00000162133 | 59.492 | 49.5321 |
| ENSOJAG00000006216 | oryzias_javanicus | ENSOJAP00000012038 | 60.5538 | 52.0615 | denticeps_clupeoides | ENSDCDP00000027435 | 58.5714 | 50.3571 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
