Description

Ensembl ID ENSODEG00000018137 Gene ID 101575500 Accession -
Symbol RPUSD3 Alias - Full Name RNA pseudouridine synthase D3
Status Confidence Length 4037 bases Strand Plus strand
Position JH651523.1 : 12513553 - 12517589 RNA binding domain PseudoU_synth_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSODEP00000024793 PseudoU_synth_2 PF00849 2.2e-15 1
ENSODEP00000024794 PseudoU_synth_2 PF00849 3.4e-13 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RPUSD3-201 ENSODET00000025070 855 284aa ENSODEP00000024793
RPUSD3-202 ENSODET00000025071 699 232aa ENSODEP00000024794

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSODEG00000018137octodon_degusENSODEP0000002346116.63529.26276octodon_degusENSODEP0000002479330.985917.2535
ENSODEG00000018137octodon_degusENSODEP0000000609435.543822.5464octodon_degusENSODEP0000002479347.183129.9296
ENSODEG00000018137octodon_degusENSODEP0000002310026.470616.9935octodon_degusENSODEP0000002479328.521118.3099

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSODEG00000018137octodon_degusENSODEP0000002479363.028250.3521ornithorhynchus_anatinusENSOANP0000001913055.076944
ENSODEG00000018137octodon_degusENSODEP0000002479371.126859.8592sarcophilus_harrisiiENSSHAP0000001830358.381549.1329
ENSODEG00000018137octodon_degusENSODEP0000002479368.309958.0986notamacropus_eugeniiENSMEUP0000001194775.486464.2023
ENSODEG00000018137octodon_degusENSODEP0000002479352.112746.831choloepus_hoffmanniENSCHOP0000000898956.273850.5703
ENSODEG00000018137octodon_degusENSODEP0000002479380.281771.831dasypus_novemcinctusENSDNOP0000003132160.317553.9683
ENSODEG00000018137octodon_degusENSODEP0000002479363.028254.9296erinaceus_europaeusENSEEUP0000000670550.56544.0678
ENSODEG00000018137octodon_degusENSODEP0000002479378.16971.831echinops_telfairiENSETEP0000000531162.889557.7904
ENSODEG00000018137octodon_degusENSODEP0000002479378.521171.1268callithrix_jacchusENSCJAP0000008478556.030250.7538
ENSODEG00000018137octodon_degusENSODEP0000002479343.66237.3239callithrix_jacchusENSCJAP0000008463352.320744.7257
ENSODEG00000018137octodon_degusENSODEP0000002479384.859277.8169cercocebus_atysENSCATP0000002708668.66162.963
ENSODEG00000018137octodon_degusENSODEP0000002479384.154976.0563macaca_fascicularisENSMFAP0000005502853.111148
ENSODEG00000018137octodon_degusENSODEP0000002479379.225371.1268macaca_mulattaENSMMUP0000000472263.025256.5826
ENSODEG00000018137octodon_degusENSODEP0000002479385.211377.8169macaca_nemestrinaENSMNEP0000003421168.945962.963
ENSODEG00000018137octodon_degusENSODEP0000002479384.859277.8169papio_anubisENSPANP0000001818868.66162.963
ENSODEG00000018137octodon_degusENSODEP0000002479384.859277.8169mandrillus_leucophaeusENSMLEP0000001946968.66162.963
ENSODEG00000018137octodon_degusENSODEP0000002479384.154976.0563gorilla_gorillaENSGGOP0000001279968.091261.5385
ENSODEG00000018137octodon_degusENSODEP0000002479383.802875.7042pan_paniscusENSPPAP0000003015767.806361.2536
ENSODEG00000018137octodon_degusENSODEP0000002479384.154976.7606pongo_abeliiENSPPYP0000001529068.285762.2857
ENSODEG00000018137octodon_degusENSODEP0000002479384.154976.0563pan_troglodytesENSPTRP0000007857368.091261.5385
ENSODEG00000018137octodon_degusENSODEP0000002479383.802875.7042homo_sapiensENSP0000037333169.387862.6822
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375canis_lupus_familiarisENSCAFP0084501224066.193260.5114
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375.3521vulpes_vulpesENSVVUP0000003277667.732662.2093
ENSODEG00000018137octodon_degusENSODEP0000002479379.577574.2958ursus_americanusENSUAMP0000001413270.40565.7321
ENSODEG00000018137octodon_degusENSODEP0000002479381.690176.0563ailuropoda_melanoleucaENSAMEP0000001713365.909161.3636
ENSODEG00000018137octodon_degusENSODEP0000002479381.33875.3521mustela_putorius_furoENSMPUP0000001702365.62560.7955
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375.3521felis_catusENSFCAP0000001317366.193260.7955
ENSODEG00000018137octodon_degusENSODEP0000002479382.394476.7606panthera_leoENSPLOP0000000637466.477361.9318
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375.7042panthera_pardusENSPPRP0000000100666.193261.0795
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375tursiops_truncatusENSTTRP0000000713766.193260.5114
ENSODEG00000018137octodon_degusENSODEP0000002479382.394475.3521physeter_catodonENSPCTP0000501970866.666760.9687
ENSODEG00000018137octodon_degusENSODEP0000002479383.098676.0563delphinapterus_leucasENSDLEP0000001783667.045561.3636
ENSODEG00000018137octodon_degusENSODEP0000002479382.394475.7042balaenoptera_musculusENSBMSP0001001075866.477361.0795
ENSODEG00000018137octodon_degusENSODEP0000002479382.042374.6479loxodonta_africanaENSLAFP0000001467567.732661.6279
ENSODEG00000018137octodon_degusENSODEP0000002479377.816969.7183equus_asinusENSEASP0000504262459.891653.6585
ENSODEG00000018137octodon_degusENSODEP0000002479383.098676.0563equus_caballusENSECAP0000006542265.555660
ENSODEG00000018137octodon_degusENSODEP0000002479348.943743.3099procavia_capensisENSPCAP0000001282248.096942.5606
ENSODEG00000018137octodon_degusENSODEP0000002479383.802875.7042sus_scrofaENSSSCP0000001231367.613661.0795
ENSODEG00000018137octodon_degusENSODEP0000002479383.802876.4084camelus_dromedariusENSCDRP0000501667765.205559.4521
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375bos_taurusENSBTAP0000001047867.732661.9186
ENSODEG00000018137octodon_degusENSODEP0000002479381.690174.6479capra_hircusENSCHIP0000003181069.669763.6637
ENSODEG00000018137octodon_degusENSODEP0000002479381.690175.3521ovis_aries_rambouilletENSOARP0002003263866.096960.9687
ENSODEG00000018137octodon_degusENSODEP0000002479365.845159.507ochotona_princepsENSOPRP0000000213153.276448.1481
ENSODEG00000018137octodon_degusENSODEP0000002479383.098675.7042marmota_marmota_marmotaENSMMMP0000001022368.604762.5
ENSODEG00000018137octodon_degusENSODEP0000002479352.464843.3099oryctolagus_cuniculusENSOCUP0000002181834.331828.341
ENSODEG00000018137octodon_degusENSODEP0000002479383.450776.0563urocitellus_parryiiENSUPAP0001002908468.895362.7907
ENSODEG00000018137octodon_degusENSODEP0000002479378.16971.831dipodomys_ordiiENSDORP0000002225877.351971.0801
ENSODEG00000018137octodon_degusENSODEP0000002479379.929671.4789cricetulus_griseus_chok1gshdENSCGRP0000100395462.707256.0773
ENSODEG00000018137octodon_degusENSODEP0000002479378.873269.0141mus_caroliMGP_CAROLIEiJ_P007541765.116356.9767
ENSODEG00000018137octodon_degusENSODEP0000002479379.577570.0704mus_musculusENSMUSP0000010871565.697757.8488
ENSODEG00000018137octodon_degusENSODEP0000002479380.633871.1268mesocricetus_auratusENSMAUP0000001627966.569858.7209
ENSODEG00000018137octodon_degusENSODEP0000002479379.225369.7183mus_spretusMGP_SPRETEiJ_P007848465.40757.5581
ENSODEG00000018137octodon_degusENSODEP0000002479379.225370.4225mus_pahariMGP_PahariEiJ_P005161665.40758.1395
ENSODEG00000018137octodon_degusENSODEP0000002479373.943765.1408rattus_norvegicusENSRNOP0000005950365.62557.8125
ENSODEG00000018137octodon_degusENSODEP0000002479379.225369.3662mus_spicilegusENSMSIP0000003196352.570146.028
ENSODEG00000018137octodon_degusENSODEP0000002479383.098676.0563microcebus_murinusENSMICP0000000211368.604762.7907
ENSODEG00000018137octodon_degusENSODEP0000002479387.323984.1549cavia_porcellusENSCPOP0000002419969.859267.3239
ENSODEG00000018137octodon_degusENSODEP0000002479381.690176.4084ursus_maritimusENSUMAP0000002584165.909161.6477
ENSODEG00000018137octodon_degusENSODEP0000002479370.422559.8592phascolarctos_cinereusENSPCIP0000002943465.359555.5556
ENSODEG00000018137octodon_degusENSODEP0000002479364.788757.7465tupaia_belangeriENSTBEP0000000015163.888956.9444
ENSODEG00000018137octodon_degusENSODEP0000002479382.394475.3521bos_grunniensENSBGRP0000001705766.666760.9687
ENSODEG00000018137octodon_degusENSODEP0000002479382.746575saimiri_boliviensis_boliviensisENSSBOP0000004021767.528761.2069
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375.3521catagonus_wagneriENSCWAP0000002891666.193260.7955
ENSODEG00000018137octodon_degusENSODEP0000002479369.014156.6901monodelphis_domesticaENSMODP0000000641751.989442.7056
ENSODEG00000018137octodon_degusENSODEP0000002479383.098675.3521sciurus_vulgarisENSSVLP0000503148467.236560.9687
ENSODEG00000018137octodon_degusENSODEP0000002479382.394475.7042phocoena_sinusENSPSNP0000002447966.477361.0795
ENSODEG00000018137octodon_degusENSODEP0000002479379.929671.1268peromyscus_maniculatus_bairdiiENSPEMP0000001875265.988458.7209
ENSODEG00000018137octodon_degusENSODEP0000002479378.521169.7183jaculus_jaculusENSJJAP0000000856164.825657.5581
ENSODEG00000018137octodon_degusENSODEP0000002479382.394475.3521bos_mutusENSBMUP0000001490866.666760.9687
ENSODEG00000018137octodon_degusENSODEP0000002479380.985973.2394nannospalax_galiliENSNGAP0000002590468.656762.0896
ENSODEG00000018137octodon_degusENSODEP0000002479371.83160.9155vombatus_ursinusENSVURP000100143536050.8824
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375canis_lupus_dingoENSCAFP0002001058166.193260.5114
ENSODEG00000018137octodon_degusENSODEP0000002479382.746576.0563prolemur_simusENSPSMP0000001333466.951661.5385
ENSODEG00000018137octodon_degusENSODEP0000002479381.690175.7042moschus_moschiferusENSMMSP0000003205465.909161.0795
ENSODEG00000018137octodon_degusENSODEP0000002479383.098673.5916rhinolophus_ferrumequinumENSRFEP0001002001946.732741.3861
ENSODEG00000018137octodon_degusENSODEP0000002479385.563478.5211rhinopithecus_bietiENSRBIP0000003512669.230863.5328
ENSODEG00000018137octodon_degusENSODEP0000002479367.605660.5634chinchilla_lanigeraENSCLAP0000000455661.146554.7771
ENSODEG00000018137octodon_degusENSODEP0000002479385.211378.169chlorocebus_sabaeusENSCSAP0000000669968.945963.2479
ENSODEG00000018137octodon_degusENSODEP0000002479383.098675.7042cebus_imitatorENSCCAP0000002349967.816161.7816
ENSODEG00000018137octodon_degusENSODEP0000002479382.042375bos_indicus_hybridENSBIXP0000502534966.381860.6838
ENSODEG00000018137octodon_degusENSODEP0000002479383.802877.1127propithecus_coquereliENSPCOP0000001340967.613662.2159
ENSODEG00000018137octodon_degusENSODEP0000002479381.33873.5916carlito_syrichtaENSTSYP0000003006366.379360.0575
ENSODEG00000018137octodon_degusENSODEP0000002479383.098675.3521pteropus_vampyrusENSPVAP0000001047167.045560.7955
ENSODEG00000018137octodon_degusENSODEP0000002479379.577573.2394otolemur_garnettiiENSOGAP0000001128171.974566.242
ENSODEG00000018137octodon_degusENSODEP0000002479382.394475.7042monodon_monocerosENSMMNP0001501448266.477361.0795
ENSODEG00000018137octodon_degusENSODEP0000002479380.985975neovison_visonENSNVIP0000001887246.464643.0303
ENSODEG00000018137octodon_degusENSODEP0000002479385.563478.5211rhinopithecus_roxellanaENSRROP0000004007762.467957.3265
ENSODEG00000018137octodon_degusENSODEP0000002479383.098677.1127panthera_tigris_altaicaENSPTIP0000000428868.604763.6628
ENSODEG00000018137octodon_degusENSODEP0000002479384.154977.8169myotis_lucifugusENSMLUP0000000560268.678263.5057
ENSODEG00000018137octodon_degusENSODEP0000002479388.380385.2113heterocephalus_glaber_femaleENSHGLP0000001635764.524462.2108
ENSODEG00000018137octodon_degusENSODEP0000002479380.281769.7183microtus_ochrogasterENSMOCP0000002697066.279157.5581
ENSODEG00000018137octodon_degusENSODEP0000002479347.183140.493aotus_nancymaaeENSANAP000000008685042.9104
ENSODEG00000018137octodon_degusENSODEP0000002479347.183141.9014aotus_nancymaaeENSANAP0000004166764.423157.2115
ENSODEG00000018137octodon_degusENSODEP0000002479352.464846.1268aotus_nancymaaeENSANAP0000000382459.839452.6104
ENSODEG00000018137octodon_degusENSODEP0000002479368.309962.3239nomascus_leucogenysENSNLEP0000000509964.451858.804
ENSODEG00000018137octodon_degusENSODEP0000002479380.633873.9437cervus_hanglu_yarkandensisENSCHYP0000002731465.056859.6591
ENSODEG00000018137octodon_degusENSODEP0000002479382.394475.3521bison_bison_bisonENSBBBP0000001089466.666760.9687
ENSODEG00000018137octodon_degusENSODEP0000002479383.450776.4084ictidomys_tridecemlineatusENSSTOP0000000188867.329561.6477
ENSODEG00000018137octodon_degusENSODEP0000002479331.690119.3662caenorhabditis_elegansZK287.7.123.255814.2119
ENSODEG00000018137octodon_degusENSODEP0000002479341.901427.8169ciona_intestinalisENSCINP0000000776035.103223.3038
ENSODEG00000018137octodon_degusENSODEP0000002479342.605628.169eptatretus_burgeriENSEBUP0000002529839.542526.1438
ENSODEG00000018137octodon_degusENSODEP0000002479341.549329.9296callorhinchus_miliiENSCMIP0000002857751.982437.4449
ENSODEG00000018137octodon_degusENSODEP0000002479321.126815.8451latimeria_chalumnaeENSLACP0000000713959.405944.5545
ENSODEG00000018137octodon_degusENSODEP0000002479362.323943.3099xenopus_tropicalisENSXETP0000005080642.857129.7821
ENSODEG00000018137octodon_degusENSODEP0000002479359.50748.2394chrysemys_picta_belliiENSCPBP0000001159364.75152.4904
ENSODEG00000018137octodon_degusENSODEP0000002479353.16944.0141crocodylus_porosusENSCPRP0000502437137.655931.1721
ENSODEG00000018137octodon_degusENSODEP0000002479326.408522.1831sphenodon_punctatusENSSPUP0000002109253.571445
ENSODEG00000018137octodon_degusENSODEP0000002479361.267644.7183notechis_scutatusENSNSUP0000000558165.660447.9245
ENSODEG00000018137octodon_degusENSODEP0000002479364.084546.1268laticauda_laticaudataENSLLTP0000002346844.827632.266
ENSODEG00000018137octodon_degusENSODEP0000002479362.676146.1268pseudonaja_textilisENSPTXP0000001864558.745943.2343
ENSODEG00000018137octodon_degusENSODEP0000002479359.859245.7746gallus_gallusENSGALP0001003150754.662441.8006
ENSODEG00000018137octodon_degusENSODEP0000002479349.647936.9718parus_majorENSPMJP0000000558459.243744.1176
ENSODEG00000018137octodon_degusENSODEP0000002479353.521140.1408geospiza_fortisENSGFOP0000000993457.575843.1818
ENSODEG00000018137octodon_degusENSODEP0000002479346.126829.2254erpetoichthys_calabaricusENSECRP0000003345142.532526.9481
ENSODEG00000018137octodon_degusENSODEP0000002479359.154945.0704taeniopygia_guttataENSTGUP0000000900657.73243.9863
ENSODEG00000018137octodon_degusENSODEP0000002479357.746544.0141strigops_habroptilaENSSHBP0000501203554.849541.806
ENSODEG00000018137octodon_degusENSODEP0000002479339.436628.8732naja_najaENSNNAP0000000184661.538545.0549
ENSODEG00000018137octodon_degusENSODEP0000002479365.49351.0563podarcis_muralisENSPMRP0000003055854.867342.7729
ENSODEG00000018137octodon_degusENSODEP0000002479364.436649.2958salvator_merianaeENSSMRP0000002120653.508840.9357
ENSODEG00000018137octodon_degusENSODEP0000002479359.50744.3662ficedula_albicollisENSFALP0000002030058.275943.4483
ENSODEG00000018137octodon_degusENSODEP0000002479364.084551.4085terrapene_carolina_triunguisENSTMTP0000002578157.053345.768
ENSODEG00000018137octodon_degusENSODEP0000002479322.535218.3099terrapene_carolina_triunguisENSTMTP0000002558742.95334.8993
ENSODEG00000018137octodon_degusENSODEP0000002479320.070411.6197hucho_huchoENSHHUP0000002184617.924510.3774
ENSODEG00000018137octodon_degusENSODEP0000002479359.50741.5493leptobrachium_leishanenseENSLLEP0000004455646.814432.687
ENSODEG00000018137octodon_degusENSODEP0000002479363.028250gopherus_evgoodeiENSGEVP0000501483955.763244.2368
ENSODEG00000018137octodon_degusENSODEP0000002479365.49351.4085anolis_carolinensisENSACAP0000000963652.991541.5954
ENSODEG00000018137octodon_degusENSODEP0000002479320.070411.9718oncorhynchus_tshawytschaENSOTSP0000503881016.52179.85507
ENSODEG00000018137octodon_degusENSODEP0000002479330.633815.493oncorhynchus_tshawytschaENSOTSP0000503872226.851913.5802
ENSODEG00000018137octodon_degusENSODEP0000002479338.380328.5211chelonoidis_abingdoniiENSCABP000000077035037.156
ENSODEG00000018137octodon_degusENSODEP0000002479359.50746.1268aquila_chrysaetos_chrysaetosENSACCP0002001501955.592143.0921

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression