RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSODEG00000009949	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	684 bases	Strand	Minus strand
Position	JH651531.1 : 18091211 - 18091894	RNA binding domain	Ribosomal_L30
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSODEP00000013464	Ribosomal_L30	PF00327	6.6e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSODET00000013642	486	161aa	ENSODEP00000013464

Gene Model

Click here to download ENSODEG00000009949's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSODEG00000009949's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSODEG00000009949	octodon_degus	ENSODEP00000025857	87.1508	86.5922	octodon_degus	ENSODEP00000013464	96.8944	96.2733
ENSODEG00000009949	octodon_degus	ENSODEP00000025434	82.6816	79.8883	octodon_degus	ENSODEP00000013464	91.9255	88.8199
ENSODEG00000009949	octodon_degus	ENSODEP00000008056	93.1677	90.6832	octodon_degus	ENSODEP00000013464	93.1677	90.6832

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	85.0932	78.2609	sarcophilus_harrisii	ENSSHAP00000033033	85.0932	78.2609
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	85.0932	75.1553	choloepus_hoffmanni	ENSCHOP00000005136	84.0491	74.2331
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	83.8509	73.913	dasypus_novemcinctus	ENSDNOP00000030024	83.8509	73.913
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	80.7453	70.1863	dasypus_novemcinctus	ENSDNOP00000017852	81.25	70.625
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	84.472	75.7764	dasypus_novemcinctus	ENSDNOP00000014475	84.472	75.7764
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	81.9876	72.0497	dasypus_novemcinctus	ENSDNOP00000025715	84.6154	74.359
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	79.5031	echinops_telfairi	ENSETEP00000004076	82.3529	75.2941
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	83.8509	callithrix_jacchus	ENSCJAP00000013148	72.2222	68.1818
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.6832	84.472	cercocebus_atys	ENSCATP00000036561	90.6832	84.472
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.6832	83.8509	macaca_fascicularis	ENSMFAP00000004020	90.6832	83.8509
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	83.8509	macaca_mulatta	ENSMMUP00000070810	90.0621	83.8509
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	74.5342	68.9441	macaca_nemestrina	ENSMNEP00000020688	89.5522	82.8358
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.6832	84.472	papio_anubis	ENSPANP00000041815	90.6832	84.472
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.6832	84.472	mandrillus_leucophaeus	ENSMLEP00000007442	90.6832	84.472
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	81.9876	gorilla_gorilla	ENSGGOP00000035658	88.8199	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	81.9876	pan_paniscus	ENSPPAP00000032064	89.441	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	82.6087	pongo_abelii	ENSPPYP00000042998	89.441	82.6087
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	81.9876	pan_troglodytes	ENSPTRP00000021034	89.441	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	81.9876	homo_sapiens	ENSP00000338057	88.8199	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	82.6087	canis_lupus_familiaris	ENSCAFP00845024837	89.441	82.6087
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	82.6087	ursus_americanus	ENSUAMP00000019673	90.0621	82.6087
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	81.3665	ailuropoda_melanoleuca	ENSAMEP00000026474	81.3559	74.0113
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	79.5031	mustela_putorius_furo	ENSMPUP00000010995	88.125	80
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	82.6087	felis_catus	ENSFCAP00000016511	56.746	52.7778
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	62.1118	52.1739	felis_catus	ENSFCAP00000058569	55.5556	46.6667
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	81.9876	panthera_leo	ENSPLOP00000018455	67.2986	62.5592
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	81.9876	panthera_pardus	ENSPPRP00000016692	88.1988	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.3354	79.5031	tursiops_truncatus	ENSTTRP00000004647	79.8851	73.5632
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	83.2298	75.1553	physeter_catodon	ENSPCTP00005013614	83.2298	75.1553
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	68.9441	59.0062	delphinapterus_leucas	ENSDLEP00000015968	71.1538	60.8974
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	84.472	76.3975	delphinapterus_leucas	ENSDLEP00000028305	84.472	76.3975
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.3354	79.5031	delphinapterus_leucas	ENSDLEP00000001645	86.3354	79.5031
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.3354	80.1242	balaenoptera_musculus	ENSBMSP00010019039	86.3354	80.1242
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	79.5031	loxodonta_africana	ENSLAFP00000006835	76.5027	69.9454
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	78.882	equus_asinus	ENSEASP00005031997	88.1988	78.882
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	78.882	equus_caballus	ENSECAP00000081887	55.2529	49.4163
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	81.9876	sus_scrofa	ENSSSCP00000068548	90.0621	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	80.7453	camelus_dromedarius	ENSCDRP00005026032	86.9565	80.7453
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	78.882	bos_taurus	ENSBTAP00000005183	88.1988	78.882
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	55.9006	44.7205	bos_taurus	ENSBTAP00000070104	50.2793	40.2235
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	80.1242	capra_hircus	ENSCHIP00000028746	88.8199	80.1242
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	79.5031	ovis_aries_rambouillet	ENSOARP00020017767	87.5776	79.5031
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	80.7453	ovis_aries_rambouillet	ENSOARP00020016142	88.1988	80.7453
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	78.2609	ochotona_princeps	ENSOPRP00000006713	84.4311	75.4491
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	86.3354	marmota_marmota_marmota	ENSMMMP00000022580	93.5484	89.6774
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	83.8509	oryctolagus_cuniculus	ENSOCUP00000003556	89.441	83.8509
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.6832	86.3354	urocitellus_parryii	ENSUPAP00010006117	94.1936	89.6774
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.3354	76.3975	dipodomys_ordii	ENSDORP00000010087	85.8025	75.9259
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	80.7453	cricetulus_griseus_chok1gshd	ENSCGRP00001004754	88.75	81.25
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	79.5031	mus_caroli	MGP_CAROLIEiJ_P0017238	88.75	80
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	78.2609	mus_musculus	ENSMUSP00000027256	87.5	78.75
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	68.9441	60.2484	mesocricetus_auratus	ENSMAUP00000015313	77.6224	67.8322
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	85.7143	78.882	mesocricetus_auratus	ENSMAUP00000024491	83.1325	76.506
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	80.7453	mesocricetus_auratus	ENSMAUP00000019334	82.5581	75.5814
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	78.882	mus_spretus	MGP_SPRETEiJ_P0018240	88.125	79.375
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	79.5031	mus_pahari	MGP_PahariEiJ_P0072586	88.75	80
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	72.6708	60.2484	rattus_norvegicus	ENSRNOP00000079080	73.5849	61.0063
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	78.882	rattus_norvegicus	ENSRNOP00000083246	76.3441	68.2796
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	77.6398	mus_spicilegus	ENSMSIP00000012657	87.5	78.125
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	81.9876	68.9441	mus_spicilegus	ENSMSIP00000021222	82.5	69.375
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	78.2609	mus_spicilegus	ENSMSIP00000007332	87.5	78.75
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	83.2298	72.0497	mus_spicilegus	ENSMSIP00000004254	85.8974	74.359
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	49.0683	44.0994	sorex_araneus	ENSSARP00000000780	58.0882	52.2059
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	80.7453	72.0497	microcebus_murinus	ENSMICP00000016554	84.9673	75.817
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	83.2298	microcebus_murinus	ENSMICP00000010575	90.0621	83.2298
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	72.6708	66.4596	microcebus_murinus	ENSMICP00000020467	86.6667	79.2593
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	83.8509	cavia_porcellus	ENSCPOP00000009619	90.9677	87.0968
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.6832	81.3665	ursus_maritimus	ENSUMAP00000011925	80.2198	71.978
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	83.8509	75.7764	phascolarctos_cinereus	ENSPCIP00000047432	83.8509	75.7764
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	61.4907	56.5217	tupaia_belangeri	ENSTBEP00000006665	57.8947	53.2164
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	55.9006	44.7205	bos_grunniens	ENSBGRP00000027414	50.8475	40.678
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	78.882	bos_grunniens	ENSBGRP00000042939	87.5776	78.882
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	83.2298	saimiri_boliviensis_boliviensis	ENSSBOP00000040689	88.1988	83.2298
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	45.3416	41.6149	saimiri_boliviensis_boliviensis	ENSSBOP00000010595	83.908	77.0115
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	84.472	catagonus_wagneri	ENSCWAP00000001290	90.0621	84.472
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	82.6087	sciurus_vulgaris	ENSSVLP00005014365	87.5776	82.6087
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	82.6087	sciurus_vulgaris	ENSSVLP00005018675	87.5776	82.6087
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	68.9441	59.0062	phocoena_sinus	ENSPSNP00000019586	71.1538	60.8974
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	81.9876	73.2919	phocoena_sinus	ENSPSNP00000027352	81.9876	73.2919
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.3354	79.5031	phocoena_sinus	ENSPSNP00000009937	86.3354	79.5031
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	83.2298	peromyscus_maniculatus_bairdii	ENSPEMP00000020326	89.375	83.75
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	85.0932	77.6398	peromyscus_maniculatus_bairdii	ENSPEMP00000005255	85.625	78.125
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	83.8509	jaculus_jaculus	ENSJJAP00000003232	88.8199	83.8509
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	78.882	bos_mutus	ENSBMUP00000001904	87.5776	78.882
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	81.3665	nannospalax_galili	ENSNGAP00000021014	88.75	81.875
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	83.2298	74.5342	vombatus_ursinus	ENSVURP00010000293	83.2298	74.5342
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	82.6087	canis_lupus_dingo	ENSCAFP00020032050	89.441	82.6087
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	82.6087	prolemur_simus	ENSPSMP00000027783	89.441	82.6087
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	79.5031	moschus_moschiferus	ENSMMSP00000002631	87.5776	79.5031
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	82.6087	rhinolophus_ferrumequinum	ENSRFEP00010033451	86.3095	79.1667
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	82.6087	75.7764	rhinopithecus_bieti	ENSRBIP00000036252	85.8064	78.7097
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	93.1677	89.441	chinchilla_lanigera	ENSCLAP00000008109	83.7989	80.4469
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	83.2298	chlorocebus_sabaeus	ENSCSAP00000013255	90.0621	83.2298
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	82.6087	77.0186	cebus_imitator	ENSCCAP00000003034	83.6478	77.9874
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	81.3665	cebus_imitator	ENSCCAP00000032871	87.5	81.875
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	78.2609	bos_indicus_hybrid	ENSBIXP00005008738	58.5062	52.2822
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	84.472	propithecus_coquereli	ENSPCOP00000005238	89.441	84.472
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	85.0932	78.882	propithecus_coquereli	ENSPCOP00000000351	85.0932	78.882
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	76.3975	67.7019	carlito_syrichta	ENSTSYP00000023768	83.1081	73.6487
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	79.5031	carlito_syrichta	ENSTSYP00000031451	88.1988	79.5031
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	80.7453	pteropus_vampyrus	ENSPVAP00000006219	82.4561	76.0234
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	81.9876	otolemur_garnettii	ENSOGAP00000002000	85.6287	79.0419
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.3354	77.6398	otolemur_garnettii	ENSOGAP00000016336	86.3354	77.6398
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	80.1242	72.6708	otolemur_garnettii	ENSOGAP00000019310	81.6456	74.0506
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	83.8509	75.7764	monodon_monoceros	ENSMMNP00015029784	83.8509	75.7764
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.3354	79.5031	monodon_monoceros	ENSMMNP00015021217	86.3354	79.5031
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	86.9565	79.5031	neovison_vison	ENSNVIP00000030201	87.5	80
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	83.2298	rhinopithecus_roxellana	ENSRROP00000043247	89.441	83.2298
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.1988	81.9876	panthera_tigris_altaica	ENSPTIP00000002003	88.1988	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	89.441	83.2298	myotis_lucifugus	ENSMLUP00000021261	89.441	83.2298
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	81.3665	microtus_ochrogaster	ENSMOCP00000006049	89.375	81.875
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	81.9876	aotus_nancymaae	ENSANAP00000020956	88.8199	81.9876
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	90.0621	83.2298	nomascus_leucogenys	ENSNLEP00000042462	90.0621	83.2298
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	70.8075	60.8696	nomascus_leucogenys	ENSNLEP00000025972	79.7203	68.5315
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	88.8199	80.7453	cervus_hanglu_yarkandensis	ENSCHYP00000015171	88.8199	80.7453
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	57.764	45.9627	bison_bison_bison	ENSBBBP00000026481	50.2703	40
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	87.5776	78.2609	bison_bison_bison	ENSBBBP00000015491	87.5776	78.2609
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	63.9752	48.4472	gadus_morhua	ENSGMOP00000013450	65.1899	49.3671
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	58.3851	47.8261	sphenodon_punctatus	ENSSPUP00000000839	53.4091	43.75
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	67.0807	49.6894	hucho_hucho	ENSHHUP00000047090	61.0169	45.1977
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	68.323	57.764	gopherus_evgoodei	ENSGEVP00005000140	75.8621	64.1379
ENSODEG00000009949	octodon_degus	ENSODEP00000013464	54.6584	36.646	coturnix_japonica	ENSCJPP00005000103	55.3459	37.1069

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

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Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression