RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOCUG00000022412	Gene ID		Accession	-
Symbol		Alias	-	Full Name	ribosomal protein S3
Status	Confidence	Length	5337 bases	Strand	Minus strand
Position	1 : 141307945 - 141313281	RNA binding domain	KH_2 , Ribosomal_S3_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOCUP00000035307	KH_2	PF07650	1.5e-11	1
ENSOCUP00000018598	KH_2	PF07650	3.8e-11	1
ENSOCUP00000018598	Ribosomal_S3_C	PF00189	3.9e-23	2
ENSOCUP00000032944	KH_2	PF07650	3.9e-11	1
ENSOCUP00000032944	Ribosomal_S3_C	PF00189	2.7e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPS3-201	ENSOCUT00000038698	910	278aa	ENSOCUP00000032944
RPS3-202	ENSOCUT00000028446	897	281aa	ENSOCUP00000018598
RPS3-203	ENSOCUT00000044508	503	158aa	ENSOCUP00000035307

Gene Model

Click here to download ENSOCUG00000022412's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOCUG00000022412's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000044347	87.7551	85.7143	oryctolagus_cuniculus	ENSOCUP00000018598	61.21	59.7865

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	72.9537	70.1068	choloepus_hoffmanni	ENSCHOP00000004720	93.6073	89.9543
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.8327	86.4769	dasypus_novemcinctus	ENSDNOP00000011538	91.7293	91.3534
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	85.0534	84.6975	erinaceus_europaeus	ENSEEUP00000013268	98.3539	97.9424
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	71.5303	71.5303	echinops_telfairi	ENSETEP00000012566	82.716	82.716
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	93.5943	92.5267	callithrix_jacchus	ENSCJAP00000028461	93.2624	92.1986
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	92.8826	92.5267	cercocebus_atys	ENSCATP00000023620	97.3881	97.0149
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	papio_anubis	ENSPANP00000000733	93.8224	93.4363
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	gorilla_gorilla	ENSGGOP00000006379	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	mandrillus_leucophaeus	ENSMLEP00000006717	93.8224	93.4363
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	pan_paniscus	ENSPPAP00000012063	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	pan_troglodytes	ENSPTRP00000062955	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.8327	84.6975	pongo_abelii	ENSPPYP00000004215	93.1298	90.8397
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	homo_sapiens	ENSP00000434643	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	canis_lupus_familiaris	ENSCAFP00845016559	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	vulpes_vulpes	ENSVVUP00000033702	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	ursus_americanus	ENSUAMP00000027871	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	mustela_putorius_furo	ENSMPUP00000009120	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	felis_catus	ENSFCAP00000011080	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	panthera_leo	ENSPLOP00000008668	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	tursiops_truncatus	ENSTTRP00000005538	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	panthera_pardus	ENSPPRP00000028833	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	delphinapterus_leucas	ENSDLEP00000003876	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	balaenoptera_musculus	ENSBMSP00010009113	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	physeter_catodon	ENSPCTP00005017935	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	loxodonta_africana	ENSLAFP00000003582	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	96.0854	95.7295	equus_caballus	ENSECAP00000011789	96.0854	95.7295
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	70.8185	70.4626	procavia_capensis	ENSPCAP00000002830	81.893	81.4815
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	sus_scrofa	ENSSSCP00000015774	92.7481	92.3664
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	bos_taurus	ENSBTAP00000003962	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	capra_hircus	ENSCHIP00000009520	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	ovis_aries_rambouillet	ENSOARP00020006090	93.4615	93.0769
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	63.3452	63.3452	ochotona_princeps	ENSOPRP00000008678	73.251	73.251
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	cavia_porcellus	ENSCPOP00000028766	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	mesocricetus_auratus	ENSMAUP00000011447	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	81.4947	80.427	mesocricetus_auratus	ENSMAUP00000004722	98.7069	97.4138
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.121	86.121	heterocephalus_glaber_female	ENSHGLP00000027191	99.5885	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	otolemur_garnettii	ENSOGAP00000004758	99.5902	99.1803
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	microcebus_murinus	ENSMICP00000020936	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	mus_spretus	MGP_SPRETEiJ_P0084207	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	95.3737	95.0178	bos_grunniens	ENSBGRP00000037211	95.3737	95.0178
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	mus_musculus	ENSMUSP00000032998	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.121	86.121	urocitellus_parryii	ENSUPAP00010016925	99.5885	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	dipodomys_ordii	ENSDORP00000002794	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	66.548	64.0569	cricetulus_griseus_chok1gshd	ENSCGRP00001003156	90.7767	87.3786
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	96.0854	95.0178	cricetulus_griseus_chok1gshd	ENSCGRP00001012207	96.0854	95.0178
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	microtus_ochrogaster	ENSMOCP00000007818	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	tupaia_belangeri	ENSTBEP00000006091	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	bos_mutus	ENSBMUP00000004815	94.186	93.7984
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	mus_caroli	MGP_CAROLIEiJ_P0080837	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	chinchilla_lanigera	ENSCLAP00000020172	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	nannospalax_galili	ENSNGAP00000014114	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	jaculus_jaculus	ENSJJAP00000017418	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	catagonus_wagneri	ENSCWAP00000002419	92.7481	92.3664
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	vicugna_pacos	ENSVPAP00000010808	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	bison_bison_bison	ENSBBBP00000026767	94.186	93.7984
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.121	86.121	myotis_lucifugus	ENSMLUP00000003714	99.5885	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	panthera_tigris_altaica	ENSPTIP00000012853	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	81.4947	81.4947	pteropus_vampyrus	ENSPVAP00000010626	94.6281	94.6281
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	96.0854	96.0854	rhinolophus_ferrumequinum	ENSRFEP00010027399	96.0854	96.0854
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	77.9359	76.1566	aotus_nancymaae	ENSANAP00000010942	97.3333	95.1111
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	aotus_nancymaae	ENSANAP00000019862	93.8224	93.4363
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	moschus_moschiferus	ENSMMSP00000013766	94.186	93.7984
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	mus_pahari	MGP_PahariEiJ_P0017676	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	96.4413	96.0854	cervus_hanglu_yarkandensis	ENSCHYP00000007057	69.8454	69.5876
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	peromyscus_maniculatus_bairdii	ENSPEMP00000025262	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	84.3416	83.274	rattus_norvegicus	ENSRNOP00000009988	97.5309	96.2963
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.121	86.121	octodon_degus	ENSODEP00000006079	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	95.3737	95.0178	bos_indicus_hybrid	ENSBIXP00005045434	95.3737	95.0178
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	saimiri_boliviensis_boliviensis	ENSSBOP00000010077	93.8224	93.4363
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	rhinopithecus_bieti	ENSRBIP00000043513	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	93.9502	93.2384	cebus_imitator	ENSCCAP00000008838	97.7778	97.037
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	rhinopithecus_roxellana	ENSRROP00000002484	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	97.153	96.4413	carlito_syrichta	ENSTSYP00000007931	97.5	96.7857
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	chlorocebus_sabaeus	ENSCSAP00000000282	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	82.2064	82.2064	sorex_araneus	ENSSARP00000006343	95.8506	95.8506
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	canis_lupus_dingo	ENSCAFP00020002483	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	monodon_monoceros	ENSMMNP00015027057	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	53.3808	53.0249	prolemur_simus	ENSPSMP00000026649	99.3377	98.6755
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	prolemur_simus	ENSPSMP00000003736	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	phocoena_sinus	ENSPSNP00000008404	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	57.2954	57.2954	sciurus_vulgaris	ENSSVLP00005020573	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	sciurus_vulgaris	ENSSVLP00005028030	94.186	94.186
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.4769	neovison_vison	ENSNVIP00000029223	100	100
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	86.4769	86.121	propithecus_coquereli	ENSPCOP00000031940	100	99.5885
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	73.6655	64.4128	caenorhabditis_elegans	C23G10.3.1	83.8057	73.2794
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	75.8007	69.395	drosophila_melanogaster	FBpp0312066	86.5854	79.2683
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	76.5125	74.0214	ciona_intestinalis	ENSCINP00000010313	81.749	79.0875
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	67.9715	63.7011	petromyzon_marinus	ENSPMAP00000008596	95.5	89.5
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	51.2456	46.2633	eptatretus_burgeri	ENSEBUP00000005415	79.558	71.8232
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	85.7651	85.4093	callorhinchus_milii	ENSCMIP00000043843	96.4	96
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	85.0534	82.9182	fundulus_heteroclitus	ENSFHEP00000034432	97.551	95.102
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	85.0534	84.6975	notechis_scutatus	ENSNSUP00000023821	98.3539	97.9424
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	85.0534	84.6975	pseudonaja_textilis	ENSPTXP00000021463	98.3539	97.9424
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	76.5125	73.3096	ciona_savignyi	ENSCSAVP00000005843	83.6576	80.1556
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	67.2598	56.9395	saccharomyces_cerevisiae	YNL178W	78.75	66.6667
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	85.4093	84.3416	nothobranchius_furzeri	ENSNFUP00015032038	95.2381	94.0476
ENSOCUG00000022412	oryctolagus_cuniculus	ENSOCUP00000018598	75.089	73.3096	naja_naja	ENSNNAP00000012024	84.4	82.4

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression