RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOCUG00000001964	Gene ID		Accession	-
Symbol	LARS2	Alias	-	Full Name	leucyl-tRNA synthetase 2, mitochondrial
Status	Confidence	Length	160973 bases	Strand	Minus strand
Position	9 : 13524040 - 13685012	RNA binding domain	tRNA-synt_1g , tRNA-synt_1 , Anticodon_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSOCUP00000001693	tRNA-synt_1g	PF09334	4.9e-17	1
ENSOCUP00000001693	tRNA-synt_1g	PF09334	4.9e-17	2
ENSOCUP00000001693	tRNA-synt_1	PF00133	6.5e-32	3
ENSOCUP00000001693	tRNA-synt_1	PF00133	6.5e-32	4
ENSOCUP00000001693	tRNA-synt_1	PF00133	6.5e-32	5
ENSOCUP00000001693	Anticodon_1	PF08264	9.4e-10	6
ENSOCUP00000027211	tRNA-synt_1g	PF09334	2e-29	1
ENSOCUP00000027211	tRNA-synt_1g	PF09334	2e-29	2
ENSOCUP00000027211	tRNA-synt_1	PF00133	4.5e-46	3
ENSOCUP00000027211	tRNA-synt_1	PF00133	4.5e-46	4
ENSOCUP00000027211	tRNA-synt_1	PF00133	4.5e-46	5
ENSOCUP00000027211	Anticodon_1	PF08264	4.4e-06	6
ENSOCUP00000027756	tRNA-synt_1g	PF09334	5.6e-18	1
ENSOCUP00000027756	tRNA-synt_1g	PF09334	5.6e-18	2
ENSOCUP00000027756	tRNA-synt_1	PF00133	4e-33	3
ENSOCUP00000027756	tRNA-synt_1	PF00133	4e-33	4
ENSOCUP00000027756	tRNA-synt_1	PF00133	4e-33	5
ENSOCUP00000027756	tRNA-synt_1	PF00133	4e-33	6
ENSOCUP00000027756	Anticodon_1	PF08264	9.1e-10	7
ENSOCUP00000030288	tRNA-synt_1g	PF09334	2.9e-29	1
ENSOCUP00000030288	tRNA-synt_1g	PF09334	2.9e-29	2
ENSOCUP00000030288	tRNA-synt_1	PF00133	3.5e-45	3
ENSOCUP00000030288	tRNA-synt_1	PF00133	3.5e-45	4
ENSOCUP00000030288	tRNA-synt_1	PF00133	3.5e-45	5
ENSOCUP00000030288	Anticodon_1	PF08264	1.1e-09	6
ENSOCUP00000031044	tRNA-synt_1g	PF09334	2e-29	1
ENSOCUP00000031044	tRNA-synt_1g	PF09334	2e-29	2
ENSOCUP00000031044	tRNA-synt_1	PF00133	1.4e-44	3
ENSOCUP00000031044	tRNA-synt_1	PF00133	1.4e-44	4
ENSOCUP00000031044	Anticodon_1	PF08264	9.4e-10	5
ENSOCUP00000032132	tRNA-synt_1g	PF09334	1.4e-23	1
ENSOCUP00000032132	tRNA-synt_1g	PF09334	1.4e-23	2
ENSOCUP00000032132	tRNA-synt_1	PF00133	1.2e-35	3
ENSOCUP00000032132	tRNA-synt_1	PF00133	1.2e-35	4
ENSOCUP00000032132	tRNA-synt_1	PF00133	1.2e-35	5
ENSOCUP00000032132	Anticodon_1	PF08264	9.5e-10	6
ENSOCUP00000041238	tRNA-synt_1g	PF09334	2.1e-29	1
ENSOCUP00000041238	tRNA-synt_1g	PF09334	2.1e-29	2
ENSOCUP00000041238	tRNA-synt_1	PF00133	1.9e-45	3
ENSOCUP00000041238	tRNA-synt_1	PF00133	1.9e-45	4
ENSOCUP00000041238	tRNA-synt_1	PF00133	1.9e-45	5
ENSOCUP00000041238	Anticodon_1	PF08264	4.6e-06	6

Showing 1 to 42 of 42 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
LARS2-201	ENSOCUT00000062957	2877	937aa	ENSOCUP00000030288
LARS2-202	ENSOCUT00000042854	2685	873aa	ENSOCUP00000032132
LARS2-203	ENSOCUT00000064858	2637	857aa	ENSOCUP00000031044
LARS2-204	ENSOCUT00000064717	2622	852aa	ENSOCUP00000027756
LARS2-205	ENSOCUT00000001965	2625	860aa	ENSOCUP00000001693
LARS2-206	ENSOCUT00000043890	3023	864aa	ENSOCUP00000041238
LARS2-207	ENSOCUT00000034162	2921	830aa	ENSOCUP00000027211

Showing 1 to 7 of 7 entries

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Gene Model

Click here to download ENSOCUG00000001964's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSOCUG00000001964's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000014519	22.504	12.4406	oryctolagus_cuniculus	ENSOCUP00000030288	30.3095	16.7556
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000024829	28.5948	15.1961	oryctolagus_cuniculus	ENSOCUP00000030288	18.6766	9.92529
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000049774	21.9163	11.4537	oryctolagus_cuniculus	ENSOCUP00000030288	21.238	11.0993
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000029971	22.3064	12.2896	oryctolagus_cuniculus	ENSOCUP00000030288	28.2817	15.5816
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000021491	23.2406	13.748	oryctolagus_cuniculus	ENSOCUP00000030288	30.3095	17.9296
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000008981	23.3755	13.2671	oryctolagus_cuniculus	ENSOCUP00000030288	27.6414	15.6884

Showing 1 to 6 of 6 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	84.2049	73.6393	ornithorhynchus_anatinus	ENSOANP00000010850	87.5694	76.5816
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	66.2753	57.2038	notamacropus_eugenii	ENSMEUP00000000031	75.2727	64.9697
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	52.6147	50.0534	choloepus_hoffmanni	ENSCHOP00000005596	59.7576	56.8485
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	72.1451	65.8484	dasypus_novemcinctus	ENSDNOP00000027307	91.5989	83.6043
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	63.0736	56.3501	erinaceus_europaeus	ENSEEUP00000008470	77.8656	69.5652
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	69.0502	62.7535	echinops_telfairi	ENSETEP00000015758	71.8091	65.2608
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	89.3276	83.5646	callithrix_jacchus	ENSCJAP00000066222	92.7938	86.8071
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	90.0747	84.0982	cercocebus_atys	ENSCATP00000004909	93.4662	87.2647
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	89.968	84.2049	macaca_fascicularis	ENSMFAP00000033447	93.3555	87.3754
ENSOCUG00000001964	oryctolagus_cuniculus	ENSOCUP00000030288	86.7663	80.1494	macaca_mulatta	ENSMMUP00000077895	89.5374	82.7093

Showing 1 to 10 of 206 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression