Description

Ensembl ID ENSOABG00000022669 Gene ID Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 19647 bases Strand Minus strand
Position VASH01007075.1 : 138672 - 158318 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSOABP00000050937 SH3_12 PF18129 3.7e-18 1
ENSOABP00000050937 XRN_N PF03159 1.4e-94 2
ENSOABP00000050937 XRN1_D1 PF18332 1.4e-28 3
ENSOABP00000050934 SH3_12 PF18129 4.2e-18 1
ENSOABP00000050934 XRN_N PF03159 1.6e-94 2
ENSOABP00000050934 XRN1_D1 PF18332 2.1e-28 3
ENSOABP00000050932 SH3_12 PF18129 4.2e-18 1
ENSOABP00000050932 XRN_N PF03159 1.5e-78 2
ENSOABP00000050932 XRN1_D1 PF18332 5.4e-17 3
ENSOABP00000050923 SH3_12 PF18129 4.3e-18 1
ENSOABP00000050923 XRN_N PF03159 1.6e-94 2
ENSOABP00000050923 XRN1_D1 PF18332 2.3e-28 3
ENSOABP00000050913 SH3_12 PF18129 5.1e-18 1
ENSOABP00000050913 XRN_N PF03159 3.4e-94 2
ENSOABP00000050913 XRN1_D1 PF18332 5.6e-28 3
ENSOABP00000050939 SH3_12 PF18129 4.5e-07 1
ENSOABP00000050939 XRN_N PF03159 2.1e-62 2
ENSOABP00000050939 XRN1_D1 PF18332 1.7e-28 3
ENSOABP00000050940 XRN_N PF03159 1.7e-62 1
ENSOABP00000050941 XRN1_D1 PF18332 2.6e-28 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSOABT00000052212 6037 1707aa ENSOABP00000050913
- ENSOABT00000052222 4725 1527aa ENSOABP00000050923
- ENSOABT00000052231 4629 1460aa ENSOABP00000050932
- ENSOABT00000052234 4473 1443aa ENSOABP00000050934
- ENSOABT00000052236 4164 1340aa ENSOABP00000050937
- ENSOABT00000052238 3462 1106aa ENSOABP00000050939
- ENSOABT00000052240 3078 978aa ENSOABP00000050940
- ENSOABT00000052241 1287 428aa ENSOABP00000050941

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSOABG00000022669

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSOABG00000022669

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression