RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSNVIG00000005034	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2774 bases	Strand	Plus strand
Position	FNWR01000205.1 : 2881991 - 2884764	RNA binding domain	Ribosomal_L44
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSNVIP00000006306	Ribosomal_L44	PF00935	5.5e-34	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSNVIT00000007411	414	137aa	ENSNVIP00000006306

Gene Model

Click here to download ENSNVIG00000005034's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSNVIG00000005034's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNVIG00000005034	neovison_vison	ENSNVIP00000011472	68.2171	57.3643	neovison_vison	ENSNVIP00000006306	64.2336	54.0146
ENSNVIG00000005034	neovison_vison	ENSNVIP00000009778	99.0566	98.1132	neovison_vison	ENSNVIP00000006306	76.6423	75.9124
ENSNVIG00000005034	neovison_vison	ENSNVIP00000018556	91.8919	90.991	neovison_vison	ENSNVIP00000006306	74.4526	73.7226
ENSNVIG00000005034	neovison_vison	ENSNVIP00000000551	99.0566	99.0566	neovison_vison	ENSNVIP00000006306	76.6423	76.6423

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	81.7518	78.8321	sarcophilus_harrisii	ENSSHAP00000027853	51.6129	49.7696
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	74.4526	74.4526	microcebus_murinus	ENSMICP00000043770	96.2264	96.2264
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.9124	73.7226	sorex_araneus	ENSSARP00000001952	98.1132	95.283
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	80.292	78.1022	rhinolophus_ferrumequinum	ENSRFEP00010000359	58.8235	57.2192
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	73.7226	70.073	callorhinchus_milii	ENSCMIP00000004264	66.8874	63.5762
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	40.146	34.3066	astyanax_mexicanus	ENSAMXP00000027880	78.5714	67.1429
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	74.4526	71.5328	poecilia_reticulata	ENSPREP00000018725	71.831	69.0141
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	82.4818	81.0219	oryzias_latipes	ENSORLP00000030741	66.0819	64.9123
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.9124	73.7226	xenopus_tropicalis	ENSXETP00000111246	98.1132	95.283
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.9124	73.7226	sphenodon_punctatus	ENSSPUP00000022774	99.0476	96.1905
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.9124	75.1825	geospiza_fortis	ENSGFOP00000003384	99.0476	98.0952
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	52.5547	47.4453	labrus_bergylta	ENSLBEP00000005280	53.3333	48.1481
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.1825	72.9927	amphiprion_ocellaris	ENSAOCP00000015454	88.7931	86.2069
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.9124	75.1825	anser_brachyrhynchus	ENSABRP00000000761	99.0476	98.0952
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.1825	73.7226	hippocampus_comes	ENSHCOP00000021191	97.1698	95.283
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	75.1825	73.7226	amphiprion_percula	ENSAPEP00000006826	97.1698	95.283
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	77.3723	75.9124	stegastes_partitus	ENSSPAP00000013755	68.3871	67.0968
ENSNVIG00000005034	neovison_vison	ENSNVIP00000006306	73.7226	70.073	leptobrachium_leishanense	ENSLLEP00000027703	76.5152	72.7273

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression