RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSNLEG00000014561	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	15952 bases	Strand	Minus strand
Position	17 : 85847129 - 85863080	RNA binding domain	tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSNLEP00000031819	tRNA-synt_2b	PF00587	7.7e-25	1
ENSNLEP00000017751	tRNA-synt_2b	PF00587	1.1e-24	1
ENSNLEP00000033626	tRNA-synt_2b	PF00587	1.1e-12	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSNLET00000038531	564	187aa	ENSNLEP00000033626
-	ENSNLET00000033051	1563	520aa	ENSNLEP00000031819
-	ENSNLET00000018638	1557	518aa	ENSNLEP00000017751

Gene Model

Click here to download ENSNLEG00000014561's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSNLEG00000014561's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNLEG00000014561

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNLEG00000014561	nomascus_leucogenys	ENSNLEP00000031819	98.8462	97.8846	gorilla_gorilla	ENSGGOP00000002458	98.8462	97.8846
ENSNLEG00000014561	nomascus_leucogenys	ENSNLEP00000031819	29.4231	25.9615	marmota_marmota_marmota	ENSMMMP00000000344	78.0612	68.8775
ENSNLEG00000014561	nomascus_leucogenys	ENSNLEP00000031819	92.8846	89.0385	propithecus_coquereli	ENSPCOP00000010866	93.0636	89.21
ENSNLEG00000014561	nomascus_leucogenys	ENSNLEP00000031819	66.3462	51.3462	laticauda_laticaudata	ENSLLTP00000012178	70.5521	54.6012
ENSNLEG00000014561	nomascus_leucogenys	ENSNLEP00000031819	17.1154	12.5	anas_platyrhynchos_platyrhynchos	ENSAPLP00000017126	38.0342	27.7778
ENSNLEG00000014561	nomascus_leucogenys	ENSNLEP00000031819	70.7692	61.1538	gallus_gallus	ENSGALP00010014757	72.2986	62.4754
ENSNLEG00000014561	nomascus_leucogenys	ENSNLEP00000031819	14.6154	10.1923	parus_major	ENSPMJP00000003758	28.5714	19.9248

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression