RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSNFUG00015008694	Gene ID		Accession	-
Symbol	si	Alias	-	Full Name	si:ch211-153b23.4
Status	Confidence	Length	5878 bases	Strand	Minus strand
Position	sgr04 : 68467325 - 68473202	RNA binding domain	Sua5_yciO_yrdC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSNFUP00015018261	Sua5_yciO_yrdC	PF01300	1.3e-28	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
si:ch211-153b23.4-201	ENSNFUT00015019088	2556	851aa	ENSNFUP00015018261

Gene Model

Click here to download ENSNFUG00015008694's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSNFUG00015008694's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015001941	28.4058	13.6232	nothobranchius_furzeri	ENSNFUP00015018261	11.5159	5.52291

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	74.0306	68.6251	fundulus_heteroclitus	ENSFHEP00000026803	69.9223	64.8169
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	82.2562	76.7333	fundulus_heteroclitus	ENSFHEP00000008782	88.0503	82.1384
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.3138	76.3807	oryzias_latipes	ENSORLP00000007759	81.1213	74.3707
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	84.4888	77.5558	xiphophorus_maculatus	ENSXMAP00000009434	84.5882	77.6471
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	84.4888	78.3784	xiphophorus_maculatus	ENSXMAP00000041277	86.211	79.976
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	69.4477	63.4548	haplochromis_burtoni	ENSHBUP00000000564	78.382	71.618
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	84.0188	78.0258	cyclopterus_lumpus	ENSCLMP00005040204	84.0188	78.0258
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	85.3114	79.7885	lates_calcarifer	ENSLCAP00010032114	82.9714	77.6
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.0787	76.0282	oreochromis_niloticus	ENSONIP00000022530	79.5276	72.7784
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	86.134	78.9659	dicentrarchus_labrax	ENSDLAP00005019217	83.7714	76.8
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	86.134	79.5535	sparus_aurata	ENSSAUP00010035518	84.0596	77.6376
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	84.0188	76.0282	oryzias_melastigma	ENSOMEP00000026074	81.25	73.5227
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	82.7262	76.6157	cyprinodon_variegatus	ENSCVAP00000031692	87.5622	81.0945
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	82.9612	76.1457	astatotilapia_calliptera	ENSACLP00000008033	79.9547	73.3862
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	63.6898	56.5217	seriola_dumerili	ENSSDUP00000009421	72.3632	64.219
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	81.3161	75.3232	seriola_dumerili	ENSSDUP00000009070	86.0696	79.7264
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	81.4336	74.9706	poecilia_latipinna	ENSPLAP00000012883	86.7334	79.8498
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	84.0188	77.0858	scophthalmus_maximus	ENSSMAP00000016409	82.659	75.8382
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	82.0211	76.2632	amphilophus_citrinellus	ENSACIP00000008958	81.8288	76.0844
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	77.9083	71.6804	cottoperca_gobio	ENSCGOP00000027664	82.3602	75.7764
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.3138	73.7955	takifugu_rubripes	ENSTRUP00000007613	81.3073	72.0183
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	80.4935	70.8578	takifugu_rubripes	ENSTRUP00000080176	79.8368	70.2797
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	71.0928	65.8049	poecilia_formosa	ENSPFOP00000012202	85.0914	78.7623
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	85.8989	78.0258	labrus_bergylta	ENSLBEP00000035004	83.7343	76.0596
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	85.5464	79.3185	anabas_testudineus	ENSATEP00000007017	82.6334	76.6175
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	26.2045	24.2068	gasterosteus_aculeatus	ENSGACP00000024122	85.7692	79.2308
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.3138	75.9107	gasterosteus_aculeatus	ENSGACP00000024127	83.4118	76
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.4313	76.1457	oryzias_sinensis	ENSOSIP00000000541	81.0502	73.9726
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	81.0811	71.7979	tetraodon_nigroviridis	ENSTNIP00000011812	82.9327	73.4375
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	53.584	47.9436	amphiprion_percula	ENSAPEP00000024599	77.551	69.3878
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	81.4336	74.2656	amphiprion_percula	ENSAPEP00000020545	82.7957	75.5078
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	77.4383	70.3878	amphiprion_ocellaris	ENSAOCP00000007263	82.5815	75.0627
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	81.6686	73.913	cynoglossus_semilaevis	ENSCSEP00000023265	82.6397	74.7919
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	79.3185	72.8555	pundamilia_nyererei	ENSPNYP00000000330	82.6193	75.8874
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.6663	78.1434	mastacembelus_armatus	ENSMAMP00000013704	82.6945	77.2358
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	82.7262	77.4383	mastacembelus_armatus	ENSMAMP00000013804	84.4125	79.0168
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	84.2538	76.0282	larimichthys_crocea	ENSLCRP00005029285	81.9429	73.9429
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	82.3737	75.4407	acanthochromis_polyacanthus	ENSAPOP00000004514	81.9883	75.0877
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.1962	76.4982	acanthochromis_polyacanthus	ENSAPOP00000024010	82.23	75.6098
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	81.9036	74.0306	oryzias_javanicus	ENSOJAP00000003023	80.578	72.8324
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	77.5558	72.1504	sander_lucioperca	ENSSLUP00000043623	79.5181	73.9759
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.1962	77.3208	sander_lucioperca	ENSSLUP00000043508	83.787	77.8698
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	79.436	72.973	maylandia_zebra	ENSMZEP00005015238	82.7417	76.0098
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	77.3208	71.0928	neolamprologus_brichardi	ENSNBRP00000017345	82.976	76.2926
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	81.0811	75.2056	betta_splendens	ENSBSLP00000035369	80.7962	74.9415
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	90.0117	84.7239	kryptolebias_marmoratus	ENSKMAP00000009246	87.1445	82.025
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	84.6063	80.611	kryptolebias_marmoratus	ENSKMAP00000009114	88.7793	84.5869
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	61.2221	47.121	callorhinchus_milii	ENSCMIP00000009522	64.4005	49.5674
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	71.7979	59.6945	latimeria_chalumnae	ENSLACP00000020012	73.1737	60.8383
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	27.1445	24.6769	lepisosteus_oculatus	ENSLOCP00000018313	62.2642	56.6038
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	78.4959	67.9201	clupea_harengus	ENSCHAP00000052191	75.737	65.5329
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	76.7333	64.8649	danio_rerio	ENSDARP00000097499	74.5434	63.0137
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	78.0258	66.8625	astyanax_mexicanus	ENSAMXP00000014280	78.673	67.4171
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	77.2033	65.2174	carassius_auratus	ENSCARP00000004248	74.4898	62.9252
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	75.0881	64.8649	carassius_auratus	ENSCARP00000043758	76.0714	65.7143
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	76.6157	65.2174	ictalurus_punctatus	ENSIPUP00000022420	77.4347	65.9145
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	74.9706	62.1622	electrophorus_electricus	ENSEEEP00000011633	76.0429	63.0513
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	78.8484	67.4501	esox_lucius	ENSELUP00000003771	75.3086	64.422
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	80.611	70.2703	oncorhynchus_kisutch	ENSOKIP00005053088	77.6018	67.6471
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	80.0235	69.6827	oncorhynchus_kisutch	ENSOKIP00005049156	75.1656	65.4525
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	79.0834	69.2127	salmo_salar	ENSSSAP00000003835	80.0238	70.0357
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	70.1528	61.1046	salmo_salar	ENSSSAP00000078423	75.0943	65.4088
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	80.376	70.2703	oncorhynchus_mykiss	ENSOMYP00000099941	77.3756	67.6471
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	80.0235	70.0353	oncorhynchus_mykiss	ENSOMYP00000013193	76.7757	67.1928
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	80.611	70.2703	salmo_trutta	ENSSTUP00000076506	68.3948	59.6211
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	80.376	70.0353	salmo_trutta	ENSSTUP00000031491	77.3756	67.4208
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	78.8484	70.9753	gadus_morhua	ENSGMOP00000006387	77.4827	69.746
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	69.4477	54.4066	xenopus_tropicalis	ENSXETP00000093914	66.8552	52.3756
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	71.9154	57.4618	anas_platyrhynchos_platyrhynchos	ENSAPLP00000013403	70.5069	56.3364
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	69.8002	53.819	gallus_gallus	ENSGALP00010015970	67.1186	51.7514
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	69.9177	53.819	meleagris_gallopavo	ENSMGAP00000020980	67.3077	51.81
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	70.7403	55.3466	serinus_canaria	ENSSCAP00000022443	69.0367	54.0138
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	71.0928	55.6992	parus_major	ENSPMJP00000016235	69.7005	54.6083
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	70.7403	56.1692	ornithorhynchus_anatinus	ENSOANP00000036126	68.5649	54.4419
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	73.913	61.2221	erpetoichthys_calabaricus	ENSECRP00000018014	72.7168	60.2312
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	78.8484	68.1551	pygocentrus_nattereri	ENSPNAP00000013707	75.5631	65.3153
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	54.2891	43.5958	geospiza_fortis	ENSGFOP00000013690	71.2963	57.2531
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	70.8578	55.8167	taeniopygia_guttata	ENSTGUP00000005647	69.47	54.7235
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	68.6251	52.7615	ficedula_albicollis	ENSFALP00000011838	64.1054	49.2865
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	79.7885	69.4477	hucho_hucho	ENSHHUP00000065053	76.7232	66.7797
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	69.3302	60.9871	oncorhynchus_tshawytscha	ENSOTSP00005078727	76.9231	67.6662
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	69.3302	60.9871	oncorhynchus_tshawytscha	ENSOTSP00005098376	76.9231	67.6662
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	76.8508	65.2174	sinocyclocheilus_grahami	ENSSGRP00000008375	74.7429	63.4286
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	68.8602	58.6369	sinocyclocheilus_grahami	ENSSGRP00000036636	72.6146	61.834
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	66.51	52.2914	anser_brachyrhynchus	ENSABRP00000022612	70.9273	55.7644
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	13.7485	7.75558	saccharomyces_cerevisiae	YGL169W	27.4648	15.493
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	71.6804	57.2268	coturnix_japonica	ENSCJPP00005021124	69.6347	55.5936
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	62.2797	47.8261	strigops_habroptila	ENSSHBP00005007502	69.6452	53.4823
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	76.6157	65.4524	paramormyrops_kingsleyae	ENSPKIP00000012059	75.9907	64.9184
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	74.5006	63.4548	paramormyrops_kingsleyae	ENSPKIP00000035480	72.9574	62.1404
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	78.0258	66.1575	denticeps_clupeoides	ENSDCDP00000013311	75.7127	64.1961
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	83.6663	77.5558	myripristis_murdjan	ENSMMDP00005015893	82.3121	76.3006
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	70.1528	54.2891	leptobrachium_leishanense	ENSLLEP00000015041	67.9181	52.5597
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	77.7908	67.9201	scleropages_formosus	ENSSFOP00015039896	76.4434	66.7437
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	75.3232	63.4548	scleropages_formosus	ENSSFOP00015006020	73.5092	61.9266
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	77.2033	65.8049	cyprinus_carpio_carpio	ENSCCRP00000054410	74.4898	63.4921
ENSNFUG00015008694	nothobranchius_furzeri	ENSNFUP00015018261	76.9683	65.6874	cyprinus_carpio_carpio	ENSCCRP00000118569	74.095	63.2353

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression