RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSNBRG00000012748	Gene ID		Accession	-
Symbol	larp6b	Alias	-	Full Name	La ribonucleoprotein 6, translational regulator b
Status	Confidence	Length	3124 bases	Strand	Minus strand
Position	JH422296.1 : 3201229 - 3204352	RNA binding domain	SUZ-C , La
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSNBRP00000016498	SUZ-C	PF12901	1.4e-05	1
ENSNBRP00000016498	La	PF05383	3.9e-11	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
larp6b-201	ENSNBRT00000016939	1194	397aa	ENSNBRP00000016498

Gene Model

Click here to download ENSNBRG00000012748's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSNBRG00000012748's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000011554	9.3361	4.87552	neolamprologus_brichardi	ENSNBRP00000016498	22.67	11.8388
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016411	26.1421	11.6751	neolamprologus_brichardi	ENSNBRP00000016498	25.9446	11.5869
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000026173	11.8098	5.06135	neolamprologus_brichardi	ENSNBRP00000016498	19.3955	8.31234
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000010419	32.8125	21.875	neolamprologus_brichardi	ENSNBRP00000016498	42.3174	28.2116
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000010220	31.2	17.2	neolamprologus_brichardi	ENSNBRP00000016498	19.6474	10.8312
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000010238	19.5652	8.69565	neolamprologus_brichardi	ENSNBRP00000016498	4.53401	2.01511
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000031388	10.0451	4.85327	neolamprologus_brichardi	ENSNBRP00000016498	22.4181	10.8312
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000014598	11.4957	5.3152	neolamprologus_brichardi	ENSNBRP00000016498	23.4257	10.8312
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000020427	19.3084	9.51009	neolamprologus_brichardi	ENSNBRP00000016498	16.8766	8.31234

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	58.6902	46.8514	fundulus_heteroclitus	ENSFHEP00000009177	56.691	45.2555
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	60.4534	47.6071	poecilia_reticulata	ENSPREP00000017526	59.1133	46.5517
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	61.2091	48.1108	xiphophorus_maculatus	ENSXMAP00000030376	64.8	50.9333
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	90.932	88.9169	haplochromis_burtoni	ENSHBUP00000028525	89.3564	87.3762
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	91.4358	86.1461	oreochromis_niloticus	ENSONIP00000070823	94.5312	89.0625
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	91.6877	89.6725	astatotilapia_calliptera	ENSACLP00000014670	91	89
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	72.2922	59.9496	lates_calcarifer	ENSLCAP00010036658	74.7396	61.9792
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	59.9496	49.8741	cyclopterus_lumpus	ENSCLMP00005044928	64.1509	53.3693
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	68.5139	56.4232	dicentrarchus_labrax	ENSDLAP00005025293	64.9165	53.4606
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	56.927	41.5617	cyprinodon_variegatus	ENSCVAP00000026529	58.3979	42.6357
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	65.995	52.8967	sparus_aurata	ENSSAUP00010067292	67.3522	53.9846
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	91.4358	89.4207	maylandia_zebra	ENSMZEP00005032750	90.75	88.75
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	71.5365	61.7128	amphilophus_citrinellus	ENSACIP00000010657	67.619	58.3333
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	68.0101	53.9043	anabas_testudineus	ENSATEP00000030734	69.9482	55.4404
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	88.665	85.3904	pundamilia_nyererei	ENSPNYP00000009254	84.0095	80.9069
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	60.7053	50.3778	acanthochromis_polyacanthus	ENSAPOP00000022420	66.9444	55.5556
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	55.1637	43.8287	seriola_dumerili	ENSSDUP00000013549	66.7683	53.0488
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	66.2468	54.9118	amphiprion_percula	ENSAPEP00000032031	66.0804	54.7739
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	63.4761	52.3929	labrus_bergylta	ENSLBEP00000021446	58.4687	48.2599
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	53.9043	41.3098	oryzias_sinensis	ENSOSIP00000038996	53.2338	40.796
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	68.0101	56.6751	mastacembelus_armatus	ENSMAMP00000008097	68.1818	56.8182
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	68.262	55.6675	stegastes_partitus	ENSSPAP00000018980	64.8325	52.8708
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	33.2494	26.9521	poecilia_formosa	ENSPFOP00000027279	80	64.8485
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	59.9496	47.3552	poecilia_latipinna	ENSPLAP00000003601	65.7459	51.9337
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	68.5139	56.4232	sander_lucioperca	ENSSLUP00000049699	69.0355	56.8528
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	64.7355	53.1486	larimichthys_crocea	ENSLCRP00005003771	66.5803	54.6632
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	65.7431	54.66	seriola_lalandi_dorsalis	ENSSLDP00000021903	60.8392	50.5828
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	49.8741	37.0277	oryzias_javanicus	ENSOJAP00000019330	58.9286	43.75
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	68.5139	55.1637	amphiprion_ocellaris	ENSAOCP00000001608	69.0355	55.5838
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	56.1713	42.0655	nothobranchius_furzeri	ENSNFUP00015052888	60.4336	45.2575
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	41.0579	22.67	drosophila_melanogaster	FBpp0311633	18.8005	10.3806
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	41.5617	24.6851	ciona_intestinalis	ENSCINP00000017569	33.6735	20
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	49.8741	34.7607	danio_rerio	ENSDARP00000019822	42.0382	29.2994
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	50.3778	35.5164	clupea_harengus	ENSCHAP00000061765	41.841	29.4979
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	49.8741	34.5088	carassius_auratus	ENSCARP00000028014	41.6842	28.8421
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	49.8741	35.0126	carassius_auratus	ENSCARP00000110477	41.6842	29.2632
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	50.3778	35.7683	carassius_auratus	ENSCARP00000013274	42.1941	29.9578
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	51.1335	35.7683	astyanax_mexicanus	ENSAMXP00000019518	38.3019	26.7925
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	47.6071	33.5013	ictalurus_punctatus	ENSIPUP00000011147	40.2128	28.2979
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	47.8589	34.5088	electrophorus_electricus	ENSEEEP00000051379	40.5983	29.2735
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	49.1184	34.5088	esox_lucius	ENSELUP00000049355	41.6667	29.2735
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	46.3476	32.2418	oncorhynchus_kisutch	ENSOKIP00005115779	45.3202	31.5271
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	46.5995	31.9899	oncorhynchus_mykiss	ENSOMYP00000039724	42.3341	29.0618
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	46.0957	31.738	salmo_salar	ENSSSAP00000159183	37.4233	25.7669
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	46.5995	31.9899	salmo_trutta	ENSSTUP00000044127	37.8323	25.9714
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	31.9899	19.6474	ciona_savignyi	ENSCSAVP00000019977	46.0145	28.2609
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	47.1033	34.2569	scleropages_formosus	ENSSFOP00015058904	39.2857	28.5714
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	48.8665	35.2645	pygocentrus_nattereri	ENSPNAP00000017580	40.4167	29.1667
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	57.6826	41.0579	myripristis_murdjan	ENSMMDP00005034015	53.2558	37.907
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	50.6297	35.0126	hucho_hucho	ENSHHUP00000059112	40.5242	28.0242
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	46.0957	31.738	oncorhynchus_tshawytscha	ENSOTSP00005036589	37.577	25.8727
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	47.8589	33.7531	paramormyrops_kingsleyae	ENSPKIP00000012048	39.4191	27.8008
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	50.3778	35.7683	sinocyclocheilus_grahami	ENSSGRP00000019800	41.9287	29.7694
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	40.5542	26.9521	sinocyclocheilus_grahami	ENSSGRP00000086341	38.3333	25.4762
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	51.1335	34.7607	denticeps_clupeoides	ENSDCDP00000035024	42.7368	29.0526
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	49.3703	34.5088	cyprinus_carpio_carpio	ENSCCRP00000129596	41.2632	28.8421
ENSNBRG00000012748	neolamprologus_brichardi	ENSNBRP00000016498	50.3778	35.7683	cyprinus_carpio_carpio	ENSCCRP00000079602	42.5532	30.2128

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression