RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSMZEG00005028002	Gene ID	101483482	Accession	-
Symbol		Alias	-	Full Name	serrate RNA effector molecule homolog
Status	Confidence	Length	10971 bases	Strand	Minus strand
Position	LG3 : 4851950 - 4862920	RNA binding domain	ARS2 , SERRATE_Ars2_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMZEP00005037547	ARS2	PF04959	6.7e-84	1
ENSMZEP00005037547	SERRATE_Ars2_N	PF12066	6.4e-38	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSMZET00005038856	3470	870aa	ENSMZEP00005037547

Gene Model

Click here to download ENSMZEG00005028002's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMZEG00005028002's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005021479	71.6795	59.7146	maylandia_zebra	ENSMZEP00005037547	75.0575	62.5287

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	46.6667	42.8736	fundulus_heteroclitus	ENSFHEP00000023228	86.7521	79.7009
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	15.0575	12.8736	poecilia_reticulata	ENSPREP00000020943	65.8291	56.2814
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	83.3333	77.2414	xiphophorus_maculatus	ENSXMAP00000002094	88.4146	81.9512
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	47.2414	43.6782	cyclopterus_lumpus	ENSCLMP00005033485	86.7089	80.1688
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	18.2759	17.1264	haplochromis_burtoni	ENSHBUP00000018894	80.303	75.2525
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	99.8851	99.7701	astatotilapia_calliptera	ENSACLP00000013782	99.8851	99.7701
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	98.6207	97.8161	oreochromis_niloticus	ENSONIP00000020257	98.7342	97.9286
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	88.8506	81.954	sparus_aurata	ENSSAUP00010023426	89.158	82.2376
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	93.2184	88.3908	lates_calcarifer	ENSLCAP00010054619	85.3684	80.9474
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	93.908	88.1609	dicentrarchus_labrax	ENSDLAP00005075365	82.9442	77.868
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	82.9885	76.7816	cyprinodon_variegatus	ENSCVAP00000029517	90.0249	83.2918
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	87.3563	81.0345	oryzias_melastigma	ENSOMEP00000005923	90.9091	84.3301
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	20.1149	19.5402	neolamprologus_brichardi	ENSNBRP00000031465	96.1538	93.4066
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	89.4253	83.4483	kryptolebias_marmoratus	ENSKMAP00000011266	89.6313	83.6406
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	44.3678	41.4943	seriola_dumerili	ENSSDUP00000002660	84.8352	79.3407
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	73.4483	69.5402	scophthalmus_maximus	ENSSMAP00000029708	92.6087	87.6812
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	82.9885	76.7816	poecilia_formosa	ENSPFOP00000016651	88.4804	81.8627
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	50	46.092	anabas_testudineus	ENSATEP00000052706	79.3796	73.1752
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	64.8276	58.8506	labrus_bergylta	ENSLBEP00000038807	87.9875	79.8752
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	34.1379	31.954	tetraodon_nigroviridis	ENSTNIP00000000412	88.9222	83.2335
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	83.7931	77.0115	tetraodon_nigroviridis	ENSTNIP00000000912	83.6969	76.9231
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	20.2299	18.8506	acanthochromis_polyacanthus	ENSAPOP00000025508	91.1917	84.9741
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	80.5747	72.5287	hippocampus_comes	ENSHCOP00000007017	88.7342	79.8734
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	21.0345	19.5402	amphilophus_citrinellus	ENSACIP00000011142	90.5941	84.1584
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	93.2184	88.9655	amphiprion_ocellaris	ENSAOCP00000023239	94.0835	89.7912
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	20.2299	20	pundamilia_nyererei	ENSPNYP00000013781	96.7033	95.6044
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	85.977	80.4598	gasterosteus_aculeatus	ENSGACP00000001428	85.7798	80.2752
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	72.1839	67.8161	sander_lucioperca	ENSSLUP00000009866	78.3042	73.5661
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	93.2184	88.9655	amphiprion_percula	ENSAPEP00000028214	94.0835	89.7912
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	84.1379	79.1954	cynoglossus_semilaevis	ENSCSEP00000008177	89.3773	84.127
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	87.2414	82.7586	stegastes_partitus	ENSSPAP00000025082	93.9356	89.1089
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	14.1379	12.9885	seriola_lalandi_dorsalis	ENSSLDP00000024205	79.3548	72.9032
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	26.4368	22.2989	oryzias_javanicus	ENSOJAP00000033893	68.4524	57.7381
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	22.1839	21.3793	oryzias_javanicus	ENSOJAP00000033881	88.5321	85.3211
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	61.6092	56.6667	larimichthys_crocea	ENSLCRP00005038410	76.0284	69.9291
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	64.1379	59.1954	nothobranchius_furzeri	ENSNFUP00015024318	87.7358	80.9748
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	71.3793	68.2759	mastacembelus_armatus	ENSMAMP00000015728	90.5248	86.5889
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	90.5747	86.3218	betta_splendens	ENSBSLP00000002166	91.2037	86.9213
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	45.977	32.8736	caenorhabditis_elegans	E01A2.2a.1	56.1798	40.1685
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	82.8736	76.5517	poecilia_latipinna	ENSPLAP00000021075	88.7931	82.0197
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	56.8966	42.069	drosophila_melanogaster	FBpp0085356	52.492	38.8123
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	56.2069	40.5747	ciona_intestinalis	ENSCINP00000007200	57.0595	41.1902
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	67.7011	53.7931	petromyzon_marinus	ENSPMAP00000010575	69.7867	55.4502
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	50	40.8046	eptatretus_burgeri	ENSEBUP00000013517	64.4444	52.5926
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	82.6437	71.8391	esox_lucius	ENSELUP00000040668	81.3348	70.7014
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	83.3333	74.9425	gadus_morhua	ENSGMOP00000036827	86.4124	77.7116
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	55.2874	40.1149	ciona_savignyi	ENSCSAVP00000014334	53.3259	38.6918
ENSMZEG00005028002	maylandia_zebra	ENSMZEP00005037547	65.7471	61.2644	myripristis_murdjan	ENSMMDP00005041555	83.5036	77.8102

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression