Description

Ensembl ID ENSMVIG00005005973 Gene ID 103759016 Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 30207 bases Strand Plus strand
Position MCBO02000559.1 : 8848486 - 8878692 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSMVIP00005008931 SH3_12 PF18129 7.1e-20 1
ENSMVIP00005008931 XRN_N PF03159 2.2e-94 2
ENSMVIP00005008931 XRN1_D1 PF18332 3.9e-32 3
ENSMVIP00005008873 SH3_12 PF18129 7.2e-20 1
ENSMVIP00005008873 XRN_N PF03159 6.9e-94 2
ENSMVIP00005008873 XRN1_D1 PF18332 4.6e-32 3
ENSMVIP00005008892 SH3_12 PF18129 7.2e-20 1
ENSMVIP00005008892 XRN_N PF03159 6.9e-94 2
ENSMVIP00005008892 XRN1_D1 PF18332 4.5e-32 3
ENSMVIP00005008945 XRN_N PF03159 2.9e-94 1
ENSMVIP00005008945 XRN1_D1 PF18332 1.7e-06 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSMVIT00005010128 5025 1674aa ENSMVIP00005008873
- ENSMVIT00005010148 5013 1670aa ENSMVIP00005008892
- ENSMVIT00005010195 4998 1665aa ENSMVIP00005008931
- ENSMVIT00005010215 2907 968aa ENSMVIP00005008945

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMVIG00005005973

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMVIG00005005973

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression