RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000057388	Gene ID	67681	Accession	-
Symbol	Mrpl18	Alias	HSPC071;MRP-L18;1010001C05Rik	Full Name	mitochondrial ribosomal protein L18
Status	Confidence	Length	4997 bases	Strand	Minus strand
Position	17 : 13130236 - 13135232	RNA binding domain	Ribosomal_L18p
Summary	Predicted to enable 5S rRNA binding activity. Predicted to be involved in rRNA import into mitochondrion. Located in mitochondrion. Is expressed in several structures, including brain; connective tissue; early conceptus; genitourinary system; and gut. Orthologous to human MRPL18 (mitochondrial ribosomal protein L18). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000078123	Ribosomal_L18p	PF00861	1.2e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Mrpl18-201	ENSMUST00000079121	1219	180aa	ENSMUSP00000078123
Mrpl18-202	ENSMUST00000159765	224	No protein	-
Mrpl18-203	ENSMUST00000162781	438	No protein	-
Mrpl18-204	ENSMUST00000162928	278	No protein	-
Mrpl18-205	ENSMUST00000162978	446	No protein	-

Gene Model

Click here to download ENSMUSG00000057388's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000057388's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000057388

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000057388

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003723	enables RNA binding	1	IEA	Mus_musculus(10090)	Function
GO:0003735	enables structural constituent of ribosome	1	IEA	Mus_musculus(10090)	Function
GO:0005739	located_in mitochondrion	3	HDA,IBA,ISO	Mus_musculus(10090)	Component
GO:0005743	located_in mitochondrial inner membrane	1	NAS	Mus_musculus(10090)	Component
GO:0005762	part_of mitochondrial large ribosomal subunit	2	ISO,NAS	Mus_musculus(10090)	Component
GO:0005840	located_in ribosome	1	IEA	Mus_musculus(10090)	Component
GO:0006412	involved_in translation	1	IEA	Mus_musculus(10090)	Process
GO:0008097	enables 5S rRNA binding	2	IBA,ISO	Mus_musculus(10090)	Function
GO:0032543	involved_in mitochondrial translation	1	NAS	Mus_musculus(10090)	Process
GO:0035928	involved_in rRNA import into mitochondrion	1	ISO	Mus_musculus(10090)	Process
GO:1990904	part_of ribonucleoprotein complex	1	IEA	Mus_musculus(10090)	Component

Expression