RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000056076	Gene ID	27979	Accession	-
Symbol	Eif3b	Alias	PRT1;Eif3s9;D5Wsu45e;EIF3-ETA;EIF3-P110;EIF3-P116	Full Name	eukaryotic translation initiation factor 3, subunit B
Status	Confidence	Length	24033 bases	Strand	Plus strand
Position	5 : 140405083 - 140429115	RNA binding domain	eIF2A , RRM_1
Summary	Contributes to translation initiation factor activity. Involved in translational initiation. Part of eukaryotic translation initiation factor 3 complex, eIF3m. Is active in synapse. Is expressed in several structures, including central nervous system; extraembryonic component; and sensory organ. Orthologous to human EIF3B (eukaryotic translation initiation factor 3 subunit B). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000098076	RRM_1	PF00076	5.2e-07	1
ENSMUSP00000098076	eIF2A	PF08662	4.4e-72	2
ENSMUSP00000143425	eIF2A	PF08662	4.4e-19	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Eif3b-201	ENSMUST00000100507	2945	803aa	ENSMUSP00000098076
Eif3b-202	ENSMUST00000197632	600	No protein	-
Eif3b-203	ENSMUST00000199377	596	175aa	ENSMUSP00000143425

Gene Model

Click here to download ENSMUSG00000056076's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000056076's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000056076

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000056076

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003676	enables nucleic acid binding	1	IEA	Mus_musculus(10090)	Function
GO:0003723	enables RNA binding	1	ISO	Mus_musculus(10090)	Function
GO:0003743	contributes_to translation initiation factor activity	4	IBA,IDA,ISO	Mus_musculus(10090)	Function
GO:0005515	enables protein binding	1	IPI	Mus_musculus(10090)	Function
GO:0005737	located_in cytoplasm	1	IEA	Mus_musculus(10090)	Component
GO:0005852	part_of eukaryotic translation initiation factor 3 complex	3	IBA,IDA,ISO	Mus_musculus(10090)	Component
GO:0006412	acts_upstream_of_or_within translation	1	IEA	Mus_musculus(10090)	Process
GO:0006413	involved_in translational initiation	3	IBA,IDA,ISO	Mus_musculus(10090)	Process
GO:0006446	involved_in regulation of translational initiation	1	ISO	Mus_musculus(10090)	Process
GO:0010494	located_in cytoplasmic stress granule	1	ISO	Mus_musculus(10090)	Component
GO:0031369	enables translation initiation factor binding	1	IEA	Mus_musculus(10090)	Function
GO:0045202	is_active_in synapse	2	EXP,IDA	Mus_musculus(10090)	Component
GO:0071541	part_of eukaryotic translation initiation factor 3 complex, eIF3m	1	IDA	Mus_musculus(10090)	Component
GO:0075522	involved_in IRES-dependent viral translational initiation	1	ISO	Mus_musculus(10090)	Process
GO:0075525	involved_in viral translational termination-reinitiation	1	ISO	Mus_musculus(10090)	Process

Expression