RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000049235	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length	17551 bases	Strand	Plus strand
Position	14 : 43935285 - 43952835	RNA binding domain	RBM1CTR , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000154633	RRM_1	PF00076	8.4e-23	1
ENSMUSP00000154633	RBM1CTR	PF08081	6.9e-22	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Gm7324-202	ENSMUST00000228507	660	30aa	ENSMUSP00000154111
Gm7324-201	ENSMUST00000094051	1647	388aa	ENSMUSP00000154633

Gene Model

Click here to download ENSMUSG00000049235's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000049235's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000049235	[{"sID": "ENSMUSG00000049235"	"sSP": "mus_musculus"	"sProtein": "ENSMUSP00000154633"	"sPercPos": 99.7423	"sPercID": 99.4845	"tID": "ENSMUSG00000037070"	"tSP": "mus_musculus"	"tGene": "Rbmxl1"

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000049235

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression