RBP Type
N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq
Ensembl ID ENSMUSG00000041057 Gene ID
72515
Accession
-
Symbol
Wdr43
Alias
Wrd43;mKIAA0007;2610318G08Rik
Full Name
WD repeat domain 43
Status
Confidence
Length
43137 bases
Strand
Plus strand
Position
17 : 71922890 - 71966026
RNA binding domain
Utp12
Summary
Enables RNA polymerase II complex binding activity and transcription elongation regulator activity. Involved in regulation of stem cell population maintenance and regulation of transcription elongation from RNA polymerase II promoter. Located in chromatin; nucleolus; and nucleoplasm. Is expressed in alimentary system; axial musculature; clavicle; renal cortex; and vibrissa. Orthologous to human WDR43 (WD repeat domain 43). [provided by Alliance of Genome Resources, Apr 2022]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSMUSP00000048337
Utp12
PF04003
1.7e-21
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
Wdr43-204
ENSMUST00000234560
2410
483aa
ENSMUSP00000157071
Wdr43-201
ENSMUST00000047086
3450
677aa
ENSMUSP00000048337
Wdr43-210
ENSMUST00000234947
528
No protein
-
Wdr43-209
ENSMUST00000234933
722
149aa
ENSMUSP00000157149
Wdr43-206
ENSMUST00000234627
663
No protein
-
Wdr43-211
ENSMUST00000235094
459
No protein
-
Wdr43-207
ENSMUST00000234656
401
No protein
-
Wdr43-203
ENSMUST00000234424
745
No protein
-
Wdr43-208
ENSMUST00000234794
297
No protein
-
Wdr43-205
ENSMUST00000234581
402
No protein
-
Wdr43-202
ENSMUST00000234339
798
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSMUSG00000041057 [{"sID": "ENSMUSG00000041057" "sSP": "mus_musculus" "sProtein": "ENSMUSP00000048337" "sPercPos": 14.3279 "sPercID": 5.76071 "tID": "ENSMUSG00000038683" "tSP": "mus_musculus" "tGene": "NA"
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSMUSG00000041057
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000462 involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1 IBA Mus_musculus(10090) Process GO:0000785 part_of chromatin 1 IDA Mus_musculus(10090) Component GO:0000993 enables RNA polymerase II complex binding 1 IDA Mus_musculus(10090) Function GO:0001650 located_in fibrillar center 1 ISO Mus_musculus(10090) Component GO:0003711 enables transcription elongation factor activity 1 IMP Mus_musculus(10090) Function GO:0003723 enables RNA binding 1 IEA Mus_musculus(10090) Function GO:0005515 enables protein binding 1 IPI Mus_musculus(10090) Function GO:0005634 located_in nucleus 1 IEA Mus_musculus(10090) Component GO:0005654 located_in nucleoplasm 1 IDA Mus_musculus(10090) Component GO:0005730 is_active_in nucleolus 3 IBA,IDA,ISO Mus_musculus(10090) Component GO:0006364 acts_upstream_of_or_within rRNA processing 1 IEA Mus_musculus(10090) Process GO:0032040 part_of small-subunit processome 1 ISO Mus_musculus(10090) Component GO:0034243 involved_in regulation of transcription elongation by RNA polymerase II 1 IMP Mus_musculus(10090) Process GO:0042254 acts_upstream_of_or_within ribosome biogenesis 1 IEA Mus_musculus(10090) Process GO:0042274 involved_in ribosomal small subunit biogenesis 1 ISO Mus_musculus(10090) Process GO:0045943 involved_in positive regulation of transcription by RNA polymerase I 1 ISO Mus_musculus(10090) Process GO:2000036 involved_in regulation of stem cell population maintenance 1 IMP Mus_musculus(10090) Process GO:2000234 involved_in positive regulation of rRNA processing 1 ISO Mus_musculus(10090) Process
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