Description

Ensembl ID ENSMUSG00000041057 Gene ID 72515 Accession -
Symbol Wdr43 Alias Wrd43;mKIAA0007;2610318G08Rik Full Name WD repeat domain 43
Status Confidence Length 43137 bases Strand Plus strand
Position 17 : 71922890 - 71966026 RNA binding domain Utp12
Summary Enables RNA polymerase II complex binding activity and transcription elongation regulator activity. Involved in regulation of stem cell population maintenance and regulation of transcription elongation from RNA polymerase II promoter. Located in chromatin; nucleolus; and nucleoplasm. Is expressed in alimentary system; axial musculature; clavicle; renal cortex; and vibrissa. Orthologous to human WDR43 (WD repeat domain 43). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSMUSP00000048337 Utp12 PF04003 1.7e-21 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Wdr43-204 ENSMUST00000234560 2410 483aa ENSMUSP00000157071
Wdr43-201 ENSMUST00000047086 3450 677aa ENSMUSP00000048337
Wdr43-210 ENSMUST00000234947 528 No protein -
Wdr43-209 ENSMUST00000234933 722 149aa ENSMUSP00000157149
Wdr43-206 ENSMUST00000234627 663 No protein -
Wdr43-211 ENSMUST00000235094 459 No protein -
Wdr43-207 ENSMUST00000234656 401 No protein -
Wdr43-203 ENSMUST00000234424 745 No protein -
Wdr43-208 ENSMUST00000234794 297 No protein -
Wdr43-205 ENSMUST00000234581 402 No protein -
Wdr43-202 ENSMUST00000234339 798 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000041057[{"sID": "ENSMUSG00000041057" "sSP": "mus_musculus" "sProtein": "ENSMUSP00000048337" "sPercPos": 14.3279 "sPercID": 5.76071 "tID": "ENSMUSG00000038683" "tSP": "mus_musculus" "tGene": "NA"

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000041057

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000462involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1IBAMus_musculus(10090)Process
GO:0000785part_of chromatin1IDAMus_musculus(10090)Component
GO:0000993enables RNA polymerase II complex binding1IDAMus_musculus(10090)Function
GO:0001650located_in fibrillar center1ISOMus_musculus(10090)Component
GO:0003711enables transcription elongation factor activity1IMPMus_musculus(10090)Function
GO:0003723enables RNA binding1IEAMus_musculus(10090)Function
GO:0005515enables protein binding1IPIMus_musculus(10090)Function
GO:0005634located_in nucleus1IEAMus_musculus(10090)Component
GO:0005654located_in nucleoplasm1IDAMus_musculus(10090)Component
GO:0005730is_active_in nucleolus3IBA,IDA,ISOMus_musculus(10090)Component
GO:0006364acts_upstream_of_or_within rRNA processing1IEAMus_musculus(10090)Process
GO:0032040part_of small-subunit processome1ISOMus_musculus(10090)Component
GO:0034243involved_in regulation of transcription elongation by RNA polymerase II1IMPMus_musculus(10090)Process
GO:0042254acts_upstream_of_or_within ribosome biogenesis1IEAMus_musculus(10090)Process
GO:0042274involved_in ribosomal small subunit biogenesis1ISOMus_musculus(10090)Process
GO:0045943involved_in positive regulation of transcription by RNA polymerase I1ISOMus_musculus(10090)Process
GO:2000036involved_in regulation of stem cell population maintenance1IMPMus_musculus(10090)Process
GO:2000234involved_in positive regulation of rRNA processing1ISOMus_musculus(10090)Process

Expression