RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSMUSG00000039130	Gene ID	232679	Accession	-
Symbol	Zc3hc1	Alias	Nipa;HSPC216;1110054L24Rik	Full Name	zinc finger, C3HC type 1
Status	Confidence	Length	24649 bases	Strand	Minus strand
Position	6 : 30366379 - 30391027	RNA binding domain	Rsm1 , zf-C3HC
Summary	Predicted to enable protein kinase binding activity. Acts upstream of or within negative regulation of extrinsic apoptotic signaling pathway in absence of ligand. Located in nucleus. Orthologous to human ZC3HC1 (zinc finger C3HC-type containing 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000100057	Rsm1	PF08600	5.2e-16	1
ENSMUSP00000100057	zf-C3HC	PF07967	8.8e-36	2
ENSMUSP00000079627	Rsm1	PF08600	5.9e-16	1
ENSMUSP00000079627	zf-C3HC	PF07967	1e-35	2
ENSMUSP00000110838	Rsm1	PF08600	2.9e-15	1
ENSMUSP00000110838	zf-C3HC	PF07967	3.2e-36	2
ENSMUSP00000135447	zf-C3HC	PF07967	5.3e-36	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Zc3hc1-201	ENSMUST00000080812	1824	501aa	ENSMUSP00000079627
Zc3hc1-210	ENSMUST00000152391	1673	459aa	ENSMUSP00000135447
Zc3hc1-211	ENSMUST00000202393	831	No protein	-
Zc3hc1-202	ENSMUST00000102992	1865	481aa	ENSMUSP00000100057
Zc3hc1-203	ENSMUST00000115184	1504	430aa	ENSMUSP00000110838
Zc3hc1-207	ENSMUST00000138983	447	No protein	-
Zc3hc1-206	ENSMUST00000136255	787	49aa	ENSMUSP00000115433
Zc3hc1-204	ENSMUST00000126945	477	No protein	-
Zc3hc1-208	ENSMUST00000147990	556	45aa	ENSMUSP00000116484
Zc3hc1-209	ENSMUST00000152101	2908	No protein	-
Zc3hc1-205	ENSMUST00000129796	362	No protein	-

Gene Model

Click here to download ENSMUSG00000039130's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000039130's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000039130

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000039130

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005515	enables protein binding	1	IPI	Mus_musculus(10090)	Function
GO:0005634	is_active_in nucleus	3	IBA,IDA,ISO	Mus_musculus(10090)	Component
GO:0005654	located_in nucleoplasm	1	ISO	Mus_musculus(10090)	Component
GO:0007049	acts_upstream_of_or_within cell cycle	1	IEA	Mus_musculus(10090)	Process
GO:0008270	enables zinc ion binding	1	IEA	Mus_musculus(10090)	Function
GO:0019901	enables protein kinase binding	1	ISO	Mus_musculus(10090)	Function
GO:0031965	located_in nuclear membrane	1	ISO	Mus_musculus(10090)	Component
GO:0046872	enables metal ion binding	1	IEA	Mus_musculus(10090)	Function
GO:0051301	acts_upstream_of_or_within cell division	1	IEA	Mus_musculus(10090)	Process
GO:2001240	acts_upstream_of_or_within negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	1	IDA	Mus_musculus(10090)	Process

Expression