RBP Type
N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq
Ensembl ID ENSMUSG00000039130 Gene ID
232679
Accession
-
Symbol
Zc3hc1
Alias
Nipa;HSPC216;1110054L24Rik
Full Name
zinc finger, C3HC type 1
Status
Confidence
Length
24649 bases
Strand
Minus strand
Position
6 : 30366379 - 30391027
RNA binding domain
Rsm1 , zf-C3HC
Summary
Predicted to enable protein kinase binding activity. Acts upstream of or within negative regulation of extrinsic apoptotic signaling pathway in absence of ligand. Located in nucleus. Orthologous to human ZC3HC1 (zinc finger C3HC-type containing 1). [provided by Alliance of Genome Resources, Apr 2022]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSMUSP00000100057
Rsm1
PF08600
5.2e-16
1
ENSMUSP00000100057
zf-C3HC
PF07967
8.8e-36
2
ENSMUSP00000079627
Rsm1
PF08600
5.9e-16
1
ENSMUSP00000079627
zf-C3HC
PF07967
1e-35
2
ENSMUSP00000110838
Rsm1
PF08600
2.9e-15
1
ENSMUSP00000110838
zf-C3HC
PF07967
3.2e-36
2
ENSMUSP00000135447
zf-C3HC
PF07967
5.3e-36
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
Zc3hc1-201
ENSMUST00000080812
1824
501aa
ENSMUSP00000079627
Zc3hc1-210
ENSMUST00000152391
1673
459aa
ENSMUSP00000135447
Zc3hc1-211
ENSMUST00000202393
831
No protein
-
Zc3hc1-202
ENSMUST00000102992
1865
481aa
ENSMUSP00000100057
Zc3hc1-203
ENSMUST00000115184
1504
430aa
ENSMUSP00000110838
Zc3hc1-207
ENSMUST00000138983
447
No protein
-
Zc3hc1-206
ENSMUST00000136255
787
49aa
ENSMUSP00000115433
Zc3hc1-204
ENSMUST00000126945
477
No protein
-
Zc3hc1-208
ENSMUST00000147990
556
45aa
ENSMUSP00000116484
Zc3hc1-209
ENSMUST00000152101
2908
No protein
-
Zc3hc1-205
ENSMUST00000129796
362
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSMUSG00000039130
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSMUSG00000039130
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0005515 enables protein binding 1 IPI Mus_musculus(10090) Function GO:0005634 is_active_in nucleus 3 IBA,IDA,ISO Mus_musculus(10090) Component GO:0005654 located_in nucleoplasm 1 ISO Mus_musculus(10090) Component GO:0007049 acts_upstream_of_or_within cell cycle 1 IEA Mus_musculus(10090) Process GO:0008270 enables zinc ion binding 1 IEA Mus_musculus(10090) Function GO:0019901 enables protein kinase binding 1 ISO Mus_musculus(10090) Function GO:0031965 located_in nuclear membrane 1 ISO Mus_musculus(10090) Component GO:0046872 enables metal ion binding 1 IEA Mus_musculus(10090) Function GO:0051301 acts_upstream_of_or_within cell division 1 IEA Mus_musculus(10090) Process GO:2001240 acts_upstream_of_or_within negative regulation of extrinsic apoptotic signaling pathway in absence of ligand 1 IDA Mus_musculus(10090) Process
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