Description

Ensembl ID ENSMUSG00000039130 Gene ID 232679 Accession -
Symbol Zc3hc1 Alias Nipa;HSPC216;1110054L24Rik Full Name zinc finger, C3HC type 1
Status Confidence Length 24649 bases Strand Minus strand
Position 6 : 30366379 - 30391027 RNA binding domain Rsm1 , zf-C3HC
Summary Predicted to enable protein kinase binding activity. Acts upstream of or within negative regulation of extrinsic apoptotic signaling pathway in absence of ligand. Located in nucleus. Orthologous to human ZC3HC1 (zinc finger C3HC-type containing 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSMUSP00000100057 Rsm1 PF08600 5.2e-16 1
ENSMUSP00000100057 zf-C3HC PF07967 8.8e-36 2
ENSMUSP00000079627 Rsm1 PF08600 5.9e-16 1
ENSMUSP00000079627 zf-C3HC PF07967 1e-35 2
ENSMUSP00000110838 Rsm1 PF08600 2.9e-15 1
ENSMUSP00000110838 zf-C3HC PF07967 3.2e-36 2
ENSMUSP00000135447 zf-C3HC PF07967 5.3e-36 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Zc3hc1-201 ENSMUST00000080812 1824 501aa ENSMUSP00000079627
Zc3hc1-210 ENSMUST00000152391 1673 459aa ENSMUSP00000135447
Zc3hc1-211 ENSMUST00000202393 831 No protein -
Zc3hc1-202 ENSMUST00000102992 1865 481aa ENSMUSP00000100057
Zc3hc1-203 ENSMUST00000115184 1504 430aa ENSMUSP00000110838
Zc3hc1-207 ENSMUST00000138983 447 No protein -
Zc3hc1-206 ENSMUST00000136255 787 49aa ENSMUSP00000115433
Zc3hc1-204 ENSMUST00000126945 477 No protein -
Zc3hc1-208 ENSMUST00000147990 556 45aa ENSMUSP00000116484
Zc3hc1-209 ENSMUST00000152101 2908 No protein -
Zc3hc1-205 ENSMUST00000129796 362 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000039130

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000039130

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIMus_musculus(10090)Function
GO:0005634is_active_in nucleus3IBA,IDA,ISOMus_musculus(10090)Component
GO:0005654located_in nucleoplasm1ISOMus_musculus(10090)Component
GO:0007049acts_upstream_of_or_within cell cycle1IEAMus_musculus(10090)Process
GO:0008270enables zinc ion binding1IEAMus_musculus(10090)Function
GO:0019901enables protein kinase binding1ISOMus_musculus(10090)Function
GO:0031965located_in nuclear membrane1ISOMus_musculus(10090)Component
GO:0046872enables metal ion binding1IEAMus_musculus(10090)Function
GO:0051301acts_upstream_of_or_within cell division1IEAMus_musculus(10090)Process
GO:2001240acts_upstream_of_or_within negative regulation of extrinsic apoptotic signaling pathway in absence of ligand1IDAMus_musculus(10090)Process

Expression