RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000037572	Gene ID	218973	Accession	-
Symbol	Wdhd1	Alias	AND-1;A630092E18;D630024B06Rik	Full Name	WD repeat and HMG-box DNA binding protein 1
Status	Confidence	Length	35914 bases	Strand	Minus strand
Position	14 : 47478401 - 47514314	RNA binding domain	eIF2A
Summary	Enables RNA binding activity; RNA polymerase binding activity; and chromatin binding activity. Acts upstream of or within RNA processing; pericentric heterochromatin organization; and regulation of chromosome organization. Located in chromosome, centromeric region. Is expressed in brain ventricular layer; inferior colliculus; submandibular gland primordium; and thymus primordium. Orthologous to human WDHD1 (WD repeat and HMG-box DNA binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000107420	eIF2A	PF08662	6e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Wdhd1-204	ENSMUST00000187531	4260	1118aa	ENSMUSP00000141182
Wdhd1-202	ENSMUST00000111792	4174	1081aa	ENSMUSP00000107422
Wdhd1-206	ENSMUST00000228810	706	No protein	-
Wdhd1-205	ENSMUST00000227041	203	67aa	ENSMUSP00000154026
Wdhd1-201	ENSMUST00000111790	2962	641aa	ENSMUSP00000107420
Wdhd1-203	ENSMUST00000139124	2777	No protein	-

Gene Model

Click here to download ENSMUSG00000037572's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000037572's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000037572

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000037572

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000278	involved_in mitotic cell cycle	1	IBA	Mus_musculus(10090)	Process
GO:0000775	located_in chromosome, centromeric region	1	IDA	Mus_musculus(10090)	Component
GO:0003677	enables DNA binding	1	IEA	Mus_musculus(10090)	Function
GO:0003682	enables chromatin binding	2	IBA,IDA	Mus_musculus(10090)	Function
GO:0003723	enables RNA binding	1	IDA	Mus_musculus(10090)	Function
GO:0005515	enables protein binding	1	IPI	Mus_musculus(10090)	Function
GO:0005634	located_in nucleus	1	IEA	Mus_musculus(10090)	Component
GO:0005654	located_in nucleoplasm	1	ISO	Mus_musculus(10090)	Component
GO:0006261	involved_in DNA-templated DNA replication	1	IBA	Mus_musculus(10090)	Process
GO:0006281	involved_in DNA repair	1	IBA	Mus_musculus(10090)	Process
GO:0006396	acts_upstream_of_or_within RNA processing	1	IMP	Mus_musculus(10090)	Process
GO:0033044	acts_upstream_of_or_within regulation of chromosome organization	1	IMP	Mus_musculus(10090)	Process
GO:0043596	is_active_in nuclear replication fork	1	IBA	Mus_musculus(10090)	Component
GO:0070063	enables RNA polymerase binding	1	IDA	Mus_musculus(10090)	Function
GO:0140462	acts_upstream_of_or_within pericentric heterochromatin organization	1	IMP	Mus_musculus(10090)	Process

Expression