Description

Ensembl ID ENSMUSG00000037070 Gene ID 19656 Accession -
Symbol Rbmxl1 Alias Rbmx;Hnrpg;Rbmxrt Full Name RNA binding motif protein, X-linked like-1
Status Confidence Length 3630 bases Strand Minus strand
Position 8 : 79231898 - 79235527 RNA binding domain RBM1CTR , RRM_1
Summary Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and chromatin binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human RBMXL1 (RBMX like 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSMUSP00000048153 RRM_1 PF00076 8.5e-23 1
ENSMUSP00000048153 RBM1CTR PF08081 6.9e-22 2
ENSMUSP00000147384 RRM_1 PF00076 8.5e-23 1
ENSMUSP00000147384 RBM1CTR PF08081 6.9e-22 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rbmxl1-201 ENSMUST00000049245 1695 388aa ENSMUSP00000048153
Rbmxl1-202 ENSMUST00000211719 1622 388aa ENSMUSP00000147384

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000037070

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000037070

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000978enables RNA polymerase II cis-regulatory region sequence-specific DNA binding1IDAMus_musculus(10090)Function
GO:0003676enables nucleic acid binding1IEAMus_musculus(10090)Function
GO:0003682enables chromatin binding1IDAMus_musculus(10090)Function
GO:0003723enables RNA binding2IBA,ISOMus_musculus(10090)Function
GO:0005515enables protein binding1IPIMus_musculus(10090)Function
GO:0005634located_in nucleus1IDAMus_musculus(10090)Component
GO:0005681part_of spliceosomal complex1IBAMus_musculus(10090)Component
GO:0006397acts_upstream_of_or_within mRNA processing1IEAMus_musculus(10090)Process
GO:0008380acts_upstream_of_or_within RNA splicing1IEAMus_musculus(10090)Process
GO:0044530part_of supraspliceosomal complex1ISOMus_musculus(10090)Component
GO:0045944involved_in positive regulation of transcription by RNA polymerase II2IDA,IMPMus_musculus(10090)Process
GO:0048026involved_in positive regulation of mRNA splicing, via spliceosome1IBAMus_musculus(10090)Process
GO:1990904part_of ribonucleoprotein complex1IEAMus_musculus(10090)Component

Expression