RBP Type
N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq
Ensembl ID ENSMUSG00000037070 Gene ID
19656
Accession
-
Symbol
Rbmxl1
Alias
Rbmx;Hnrpg;Rbmxrt
Full Name
RNA binding motif protein, X-linked like-1
Status
Confidence
Length
3630 bases
Strand
Minus strand
Position
8 : 79231898 - 79235527
RNA binding domain
RBM1CTR , RRM_1
Summary
Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and chromatin binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human RBMXL1 (RBMX like 1). [provided by Alliance of Genome Resources, Apr 2022]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSMUSP00000048153
RRM_1
PF00076
8.5e-23
1
ENSMUSP00000048153
RBM1CTR
PF08081
6.9e-22
2
ENSMUSP00000147384
RRM_1
PF00076
8.5e-23
1
ENSMUSP00000147384
RBM1CTR
PF08081
6.9e-22
2
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
Rbmxl1-201
ENSMUST00000049245
1695
388aa
ENSMUSP00000048153
Rbmxl1-202
ENSMUST00000211719
1622
388aa
ENSMUSP00000147384
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSMUSG00000037070
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSMUSG00000037070
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000978 enables RNA polymerase II cis-regulatory region sequence-specific DNA binding 1 IDA Mus_musculus(10090) Function GO:0003676 enables nucleic acid binding 1 IEA Mus_musculus(10090) Function GO:0003682 enables chromatin binding 1 IDA Mus_musculus(10090) Function GO:0003723 enables RNA binding 2 IBA,ISO Mus_musculus(10090) Function GO:0005515 enables protein binding 1 IPI Mus_musculus(10090) Function GO:0005634 located_in nucleus 1 IDA Mus_musculus(10090) Component GO:0005681 part_of spliceosomal complex 1 IBA Mus_musculus(10090) Component GO:0006397 acts_upstream_of_or_within mRNA processing 1 IEA Mus_musculus(10090) Process GO:0008380 acts_upstream_of_or_within RNA splicing 1 IEA Mus_musculus(10090) Process GO:0044530 part_of supraspliceosomal complex 1 ISO Mus_musculus(10090) Component GO:0045944 involved_in positive regulation of transcription by RNA polymerase II 2 IDA,IMP Mus_musculus(10090) Process GO:0048026 involved_in positive regulation of mRNA splicing, via spliceosome 1 IBA Mus_musculus(10090) Process GO:1990904 part_of ribonucleoprotein complex 1 IEA Mus_musculus(10090) Component
Copyright © 2023, Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.