RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000034892	Gene ID	20090	Accession	-
Symbol	Rps29	Alias	NA	Full Name	ribosomal protein S29
Status	Confidence	Length	1465 bases	Strand	Minus strand
Position	12 : 69204496 - 69205960	RNA binding domain	Ribosomal_S14
Summary	Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and positive regulation of apoptotic process. Predicted to act upstream of or within translation. Predicted to be located in polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and liver and biliary system. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Orthologous to human RPS29 (ribosomal protein S29). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000038352	Ribosomal_S14	PF00253	9e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Rps29-201	ENSMUST00000037023	390	56aa	ENSMUSP00000038352
Rps29-202	ENSMUST00000094291	461	No protein	-

Gene Model

Click here to download ENSMUSG00000034892's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000034892's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000034892

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000034892

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0002181	involved_in cytoplasmic translation	2	ISO,NAS	Mus_musculus(10090)	Process
GO:0003735	enables structural constituent of ribosome	3	IBA,IDA,ISO	Mus_musculus(10090)	Function
GO:0005737	located_in cytoplasm	1	NAS	Mus_musculus(10090)	Component
GO:0005783	located_in endoplasmic reticulum	1	IEA	Mus_musculus(10090)	Component
GO:0005829	located_in cytosol	1	TAS	Mus_musculus(10090)	Component
GO:0005840	located_in ribosome	1	IEA	Mus_musculus(10090)	Component
GO:0006412	acts_upstream_of_or_within translation	1	ISO	Mus_musculus(10090)	Process
GO:0008270	enables zinc ion binding	2	IBA,ISO	Mus_musculus(10090)	Function
GO:0022627	part_of cytosolic small ribosomal subunit	4	IBA,IDA,ISO,NAS	Mus_musculus(10090)	Component
GO:0042788	located_in polysomal ribosome	1	ISO	Mus_musculus(10090)	Component
GO:0046872	enables metal ion binding	1	IEA	Mus_musculus(10090)	Function
GO:1990904	part_of ribonucleoprotein complex	1	IEA	Mus_musculus(10090)	Component

Expression