RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000034379	Gene ID	69544	Accession	-
Symbol	Wdr5b	Alias	2310009C03Rik	Full Name	WD repeat domain 5B
Status	Confidence	Length	2739 bases	Strand	Plus strand
Position	16 : 35861560 - 35864298	RNA binding domain	eIF2A
Summary	Predicted to enable histone binding activity. Predicted to be involved in histone H3-K4 methylation. Predicted to be part of Set1C/COMPASS complex. Orthologous to human WDR5B (WD repeat domain 5B). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000040852	eIF2A	PF08662	1.4e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Wdr5b-201	ENSMUST00000042203	2739	328aa	ENSMUSP00000040852

Gene Model

Click here to download ENSMUSG00000034379's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000034379's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000034379	[{"sID": "ENSMUSG00000034379"	"sSP": "mus_musculus"	"sProtein": "ENSMUSP00000040852"	"sPercPos": 89.3293	"sPercID": 80.1829	"tID": "ENSMUSG00000026917"	"tSP": "mus_musculus"	"tGene": "Wdr5"

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000034379

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0042393	enables histone binding	1	IBA	Mus_musculus(10090)	Function
GO:0048188	part_of Set1C/COMPASS complex	1	IBA	Mus_musculus(10090)	Component
GO:0051568	involved_in histone H3-K4 methylation	1	IBA	Mus_musculus(10090)	Process

Expression