RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000033285	Gene ID	269470	Accession	-
Symbol	Wdr3	Alias	D030020G18Rik	Full Name	WD repeat domain 3
Status	Confidence	Length	24228 bases	Strand	Minus strand
Position	3 : 100045496 - 100069723	RNA binding domain	Utp12
Summary	Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be located in nuclear membrane; nucleolus; and nucleoplasm. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in cerebral cortex ventricular layer. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000060613	Utp12	PF04003	1.5e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Wdr3-201	ENSMUST00000052120	3432	942aa	ENSMUSP00000060613
Wdr3-204	ENSMUST00000135812	398	No protein	-
Wdr3-205	ENSMUST00000146989	4002	No protein	-
Wdr3-203	ENSMUST00000129319	291	No protein	-
Wdr3-202	ENSMUST00000125059	591	76aa	ENSMUSP00000135731
Wdr3-206	ENSMUST00000197602	524	61aa	ENSMUSP00000143010

Gene Model

Click here to download ENSMUSG00000033285's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000033285's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000033285	[{"sID": "ENSMUSG00000033285"	"sSP": "mus_musculus"	"sProtein": "ENSMUSP00000060613"	"sPercPos": 32.5902	"sPercID": 16.4544	"tID": "ENSMUSG00000022364"	"tSP": "mus_musculus"	"tGene": "NA"

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000033285

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005634	located_in nucleus	1	IEA	Mus_musculus(10090)	Component
GO:0005654	located_in nucleoplasm	1	ISO	Mus_musculus(10090)	Component
GO:0005730	located_in nucleolus	1	ISO	Mus_musculus(10090)	Component
GO:0030490	involved_in maturation of SSU-rRNA	1	IBA	Mus_musculus(10090)	Process
GO:0030515	enables snoRNA binding	1	IBA	Mus_musculus(10090)	Function
GO:0031965	located_in nuclear membrane	1	ISO	Mus_musculus(10090)	Component
GO:0032040	part_of small-subunit processome	2	IBA,ISO	Mus_musculus(10090)	Component
GO:0034388	part_of Pwp2p-containing subcomplex of 90S preribosome	1	IBA	Mus_musculus(10090)	Component
GO:0042274	involved_in ribosomal small subunit biogenesis	1	ISO	Mus_musculus(10090)	Process

Expression