RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000032834	Gene ID	110816	Accession	-
Symbol	Pwp2	Alias	Pwp2h;wdp103;6530411D08Rik	Full Name	PWP2 periodic tryptophan protein homolog (yeast)
Status	Confidence	Length	14241 bases	Strand	Minus strand
Position	10 : 78006743 - 78020983	RNA binding domain	Utp12
Summary	Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and ribosomal small subunit assembly. Predicted to be located in nucleus. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alimentary system; genitourinary system; heart; nervous system; and sensory organ. Orthologous to human PWP2 (PWP2 small subunit processome component). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000045812	Utp12	PF04003	2.1e-22	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Pwp2-201	ENSMUST00000042556	3872	919aa	ENSMUSP00000045812

Gene Model

Click here to download ENSMUSG00000032834's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000032834's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000032834

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000032834

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000028	involved_in ribosomal small subunit assembly	1	IBA	Mus_musculus(10090)	Process
GO:0000462	involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1	IBA	Mus_musculus(10090)	Process
GO:0005634	located_in nucleus	1	IEA	Mus_musculus(10090)	Component
GO:0032040	part_of small-subunit processome	2	IBA,ISO	Mus_musculus(10090)	Component
GO:0034388	part_of Pwp2p-containing subcomplex of 90S preribosome	1	IBA	Mus_musculus(10090)	Component
GO:0042274	involved_in ribosomal small subunit biogenesis	1	ISO	Mus_musculus(10090)	Process

Expression