RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000032560	Gene ID	235567	Accession	-
Symbol	Dnajc13	Alias	Rme8;RME-8;Gm1124;mKIAA0678;D030002L11Rik	Full Name	DnaJ heat shock protein family (Hsp40) member C13
Status	Confidence	Length	111649 bases	Strand	Minus strand
Position	9 : 104028481 - 104140129	RNA binding domain	GYF_2
Summary	Predicted to be involved in endosome organization; receptor-mediated endocytosis; and regulation of cytoplasmic transport. Predicted to be located in cytosol and early endosome membrane. Predicted to be part of WASH complex. Predicted to be active in endosome membrane. Is expressed in thymus primordium. Human ortholog(s) of this gene implicated in Parkinson's disease. Orthologous to human DNAJC13 (DnaJ heat shock protein family (Hsp40) member C13). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000140571	GYF_2	PF14237	2.1e-17	1
ENSMUSP00000035170	GYF_2	PF14237	4.4e-16	1
ENSMUSP00000139804	GYF_2	PF14237	4.4e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Dnajc13-201	ENSMUST00000035170	8012	2243aa	ENSMUSP00000035170
Dnajc13-211	ENSMUST00000189813	601	No protein	-
Dnajc13-204	ENSMUST00000188139	668	96aa	ENSMUSP00000150468
Dnajc13-213	ENSMUST00000190926	453	No protein	-
Dnajc13-203	ENSMUST00000186788	6747	2248aa	ENSMUSP00000139804
Dnajc13-207	ENSMUST00000188885	492	59aa	ENSMUSP00000141056
Dnajc13-208	ENSMUST00000188998	614	184aa	ENSMUSP00000140867
Dnajc13-205	ENSMUST00000188425	3237	No protein	-
Dnajc13-214	ENSMUST00000191199	615	No protein	-
Dnajc13-202	ENSMUST00000185503	1222	174aa	ENSMUSP00000140571
Dnajc13-209	ENSMUST00000189103	641	No protein	-
Dnajc13-206	ENSMUST00000188592	734	No protein	-
Dnajc13-212	ENSMUST00000190600	526	No protein	-
Dnajc13-210	ENSMUST00000189299	568	No protein	-

Gene Model

Click here to download ENSMUSG00000032560's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000032560's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000032560	[{"sID": "ENSMUSG00000032560"	"sSP": "mus_musculus"	"sProtein": "ENSMUSP00000139804"	"sPercPos": 6.58363	"sPercID": 3.6032	"tID": "ENSMUSG00000014195"	"tSP": "mus_musculus"	"tGene": "NA"

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000032560

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003674	enables molecular_function	1	ND	Mus_musculus(10090)	Function
GO:0005829	located_in cytosol	1	ISO	Mus_musculus(10090)	Component
GO:0006898	involved_in receptor-mediated endocytosis	1	IBA	Mus_musculus(10090)	Process
GO:0007032	involved_in endosome organization	1	ISO	Mus_musculus(10090)	Process
GO:0010008	is_active_in endosome membrane	2	IBA,ISO	Mus_musculus(10090)	Component
GO:0031901	located_in early endosome membrane	1	ISO	Mus_musculus(10090)	Component
GO:0043231	located_in intracellular membrane-bounded organelle	1	ISO	Mus_musculus(10090)	Component
GO:0071203	part_of WASH complex	1	ISO	Mus_musculus(10090)	Component
GO:1902954	involved_in regulation of early endosome to recycling endosome transport	1	ISO	Mus_musculus(10090)	Process
GO:2000641	involved_in regulation of early endosome to late endosome transport	1	ISO	Mus_musculus(10090)	Process

Expression