Description

Ensembl ID ENSMUSG00000031134 Gene ID 19655 Accession -
Symbol Rbmx Alias hnRNPG Full Name RNA binding motif protein, X chromosome
Status Confidence Length 9507 bases Strand Minus strand
Position X : 56428890 - 56438396 RNA binding domain RBM1CTR , RRM_1
Summary Predicted to enable several functions, including chromatin binding activity; identical protein binding activity; and nucleic acid binding activity. Predicted to be involved in several processes, including RNA metabolic process; cellular response to interleukin-1; and regulation of RNA metabolic process. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in euchromatin; extracellular exosome; and nucleus. Predicted to be part of catalytic step 2 spliceosome and supraspliceosomal complex. Is expressed in several structures, including central nervous system; female reproductive system; gut; sensory organ; and thymus. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Shashi type. Orthologous to human RBMX (RNA binding motif protein X-linked). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSMUSP00000118121 RRM_1 PF00076 8.1e-24 1
ENSMUSP00000125720 RRM_1 PF00076 7.7e-23 1
ENSMUSP00000125720 RBM1CTR PF08081 1.6e-22 2
ENSMUSP00000096070 RRM_1 PF00076 7.8e-23 1
ENSMUSP00000096070 RBM1CTR PF08081 1.8e-22 2
ENSMUSP00000110374 RRM_1 PF00076 1.2e-22 1
ENSMUSP00000110374 RBM1CTR PF08081 2.6e-22 2
ENSMUSP00000110378 RRM_1 PF00076 1.2e-22 1
ENSMUSP00000110378 RBM1CTR PF08081 2.6e-22 2
ENSMUSP00000138198 RBM1CTR PF08081 1.4e-22 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rbmx-205 ENSMUST00000140384 2139 289aa ENSMUSP00000125720
Rbmx-201 ENSMUST00000098470 3107 301aa ENSMUSP00000096070
Rbmx-203 ENSMUST00000114730 2019 391aa ENSMUSP00000110378
Rbmx-202 ENSMUST00000114726 2108 391aa ENSMUSP00000110374
Rbmx-206 ENSMUST00000143310 1296 263aa ENSMUSP00000138198
Rbmx-204 ENSMUST00000133346 434 103aa ENSMUSP00000118121

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000031134[{"sID": "ENSMUSG00000031134" "sSP": "mus_musculus" "sProtein": "ENSMUSP00000110374" "sPercPos": 97.4425 "sPercID": 96.4194 "tID": "ENSMUSG00000037070" "tSP": "mus_musculus" "tGene": "Rbmxl1"

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMUSG00000031134

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000381involved_in regulation of alternative mRNA splicing, via spliceosome1ISOMus_musculus(10090)Process
GO:0000791part_of euchromatin1ISOMus_musculus(10090)Component
GO:0000978enables RNA polymerase II cis-regulatory region sequence-specific DNA binding1ISOMus_musculus(10090)Function
GO:0003676enables nucleic acid binding1IEAMus_musculus(10090)Function
GO:0003682enables chromatin binding1ISOMus_musculus(10090)Function
GO:0003723enables RNA binding2IBA,ISOMus_musculus(10090)Function
GO:0003727enables single-stranded RNA binding1ISOMus_musculus(10090)Function
GO:0003729enables mRNA binding1ISOMus_musculus(10090)Function
GO:0005634located_in nucleus1ISOMus_musculus(10090)Component
GO:0005681part_of spliceosomal complex1IBAMus_musculus(10090)Component
GO:0006366involved_in transcription by RNA polymerase II1ISOMus_musculus(10090)Process
GO:0006376involved_in mRNA splice site recognition1ISOMus_musculus(10090)Process
GO:0006397acts_upstream_of_or_within mRNA processing1IEAMus_musculus(10090)Process
GO:0006509involved_in membrane protein ectodomain proteolysis1ISOMus_musculus(10090)Process
GO:0008380acts_upstream_of_or_within RNA splicing1IEAMus_musculus(10090)Process
GO:0014069is_active_in postsynaptic density1ISOMus_musculus(10090)Component
GO:0019904enables protein domain specific binding1ISOMus_musculus(10090)Function
GO:0032991part_of protein-containing complex1ISOMus_musculus(10090)Component
GO:0042802enables identical protein binding1ISOMus_musculus(10090)Function
GO:0044530part_of supraspliceosomal complex1ISOMus_musculus(10090)Component
GO:0045893involved_in positive regulation of DNA-templated transcription1ISOMus_musculus(10090)Process
GO:0045944involved_in positive regulation of transcription by RNA polymerase II1ISOMus_musculus(10090)Process
GO:0048026involved_in positive regulation of mRNA splicing, via spliceosome1IBAMus_musculus(10090)Process
GO:0070062located_in extracellular exosome1ISOMus_musculus(10090)Component
GO:0071013part_of catalytic step 2 spliceosome1ISOMus_musculus(10090)Component
GO:0071347involved_in cellular response to interleukin-11ISOMus_musculus(10090)Process
GO:0098978is_active_in glutamatergic synapse1ISOMus_musculus(10090)Component
GO:0099175involved_in regulation of postsynapse organization1ISOMus_musculus(10090)Process
GO:1990904part_of ribonucleoprotein complex1IEAMus_musculus(10090)Component

Expression