RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000027427	Gene ID	70408	Accession	-
Symbol	Polr3f	Alias	RPC6;RPC39;2810411G20Rik;3010019O03Rik;3110032A07Rik	Full Name	polymerase (RNA) III (DNA directed) polypeptide F
Status	Confidence	Length	14278 bases	Strand	Plus strand
Position	2 : 144369638 - 144383915	RNA binding domain	RNA_pol_Rpc34
Summary	Predicted to enable double-stranded DNA binding activity. Predicted to be involved in positive regulation of innate immune response and positive regulation of interferon-beta production. Predicted to act upstream of or within defense response to virus and innate immune response. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and respiratory system. Orthologous to human POLR3F (RNA polymerase III subunit F). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000028914	RNA_pol_Rpc34	PF05158	4.8e-105	1
ENSMUSP00000105644	RNA_pol_Rpc34	PF05158	1.2e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Polr3f-201	ENSMUST00000028914	4403	316aa	ENSMUSP00000028914
Polr3f-204	ENSMUST00000136999	2177	No protein	-
Polr3f-202	ENSMUST00000110017	1632	141aa	ENSMUSP00000105644
Polr3f-207	ENSMUST00000155567	792	No protein	-
Polr3f-205	ENSMUST00000143292	835	No protein	-
Polr3f-206	ENSMUST00000152311	490	No protein	-
Polr3f-203	ENSMUST00000134051	690	No protein	-

Gene Model

Click here to download ENSMUSG00000027427's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000027427's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000027427

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000027427

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000428	part_of DNA-directed RNA polymerase complex	1	IEA	Mus_musculus(10090)	Component
GO:0002376	acts_upstream_of_or_within immune system process	1	IEA	Mus_musculus(10090)	Process
GO:0003690	enables double-stranded DNA binding	1	ISO	Mus_musculus(10090)	Function
GO:0005634	located_in nucleus	1	IEA	Mus_musculus(10090)	Component
GO:0005666	part_of RNA polymerase III complex	2	IBA,ISO	Mus_musculus(10090)	Component
GO:0006383	involved_in transcription by RNA polymerase III	1	IEA	Mus_musculus(10090)	Process
GO:0032728	involved_in positive regulation of interferon-beta production	1	ISO	Mus_musculus(10090)	Process
GO:0045087	acts_upstream_of_or_within innate immune response	1	IEA	Mus_musculus(10090)	Process
GO:0045089	involved_in positive regulation of innate immune response	1	ISO	Mus_musculus(10090)	Process
GO:0051607	acts_upstream_of_or_within defense response to virus	1	IEA	Mus_musculus(10090)	Process

Expression