RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000025872	Gene ID	73666	Accession	-
Symbol	Thoc3	Alias	2410044K02Rik	Full Name	THO complex 3
Status	Confidence	Length	10013 bases	Strand	Minus strand
Position	13 : 54606650 - 54616662	RNA binding domain	eIF2A
Summary	Predicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus and viral mRNA export from host cell nucleus. Predicted to act upstream of or within RNA splicing; mRNA processing; and mRNA transport. Predicted to be located in nucleus. Predicted to be part of THO complex part of transcription export complex. Predicted to colocalize with chromosome, telomeric region. Orthologous to human THOC3 (THO complex 3). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000026990	eIF2A	PF08662	7.8e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Thoc3-201	ENSMUST00000026990	2335	351aa	ENSMUSP00000026990
Thoc3-203	ENSMUST00000151158	843	No protein	-
Thoc3-202	ENSMUST00000135404	465	No protein	-

Gene Model

Click here to download ENSMUSG00000025872's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000025872's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000025872

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000025872

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000346	part_of transcription export complex	1	ISO	Mus_musculus(10090)	Component
GO:0000445	part_of THO complex part of transcription export complex	2	IBA,ISO	Mus_musculus(10090)	Component
GO:0000781	colocalizes_with chromosome, telomeric region	1	ISO	Mus_musculus(10090)	Component
GO:0003723	enables RNA binding	1	IEA	Mus_musculus(10090)	Function
GO:0005515	enables protein binding	1	IPI	Mus_musculus(10090)	Function
GO:0005634	located_in nucleus	1	IEA	Mus_musculus(10090)	Component
GO:0006397	acts_upstream_of_or_within mRNA processing	1	IEA	Mus_musculus(10090)	Process
GO:0006406	involved_in mRNA export from nucleus	2	IBA,ISO	Mus_musculus(10090)	Process
GO:0008380	acts_upstream_of_or_within RNA splicing	1	IEA	Mus_musculus(10090)	Process
GO:0046784	involved_in viral mRNA export from host cell nucleus	1	ISO	Mus_musculus(10090)	Process
GO:0051028	acts_upstream_of_or_within mRNA transport	1	IEA	Mus_musculus(10090)	Process

Expression