RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000024999	Gene ID	57753	Accession	-
Symbol	Noc3l	Alias	Fad24	Full Name	NOC3 like DNA replication regulator
Status	Confidence	Length	31110 bases	Strand	Minus strand
Position	19 : 38776572 - 38807681	RNA binding domain	NOC3p , CBF
Summary	Predicted to enable chromatin binding activity. Acts upstream of or within fat cell differentiation. Located in nuclear speck and nucleolus. Is expressed in several structures, including central nervous system; ganglia; olfactory epithelium; thymus; and urinary system. Orthologous to human NOC3L (NOC3 like DNA replication regulator). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000025963	NOC3p	PF07540	8.1e-29	1
ENSMUSP00000025963	CBF	PF03914	6.4e-29	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Noc3l-201	ENSMUST00000025963	3977	807aa	ENSMUSP00000025963

Gene Model

Click here to download ENSMUSG00000024999's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000024999's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000024999

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000024999

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003682	enables chromatin binding	1	IBA	Mus_musculus(10090)	Function
GO:0005634	located_in nucleus	1	IEA	Mus_musculus(10090)	Component
GO:0005654	located_in nucleoplasm	1	ISO	Mus_musculus(10090)	Component
GO:0005730	is_active_in nucleolus	3	IBA,IDA,ISO	Mus_musculus(10090)	Component
GO:0005739	located_in mitochondrion	1	ISO	Mus_musculus(10090)	Component
GO:0006270	involved_in DNA replication initiation	1	IBA	Mus_musculus(10090)	Process
GO:0016607	located_in nuclear speck	1	IDA	Mus_musculus(10090)	Component
GO:0045444	acts_upstream_of_or_within fat cell differentiation	1	IMP	Mus_musculus(10090)	Process

Expression