RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000024800	Gene ID	54364	Accession	-
Symbol	Rpp30	Alias	TSG15;Rnasep2	Full Name	ribonuclease P/MRP 30 subunit
Status	Confidence	Length	21047 bases	Strand	Plus strand
Position	19 : 36061131 - 36082177	RNA binding domain	RNase_P_p30
Summary	Predicted to enable ribonuclease P RNA binding activity. Predicted to contribute to ribonuclease P activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA 5'-leader removal. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Is expressed in several structures, including alimentary system; brain ventricular layer; olfactory epithelium; seminiferous cord; and vibrissa. Orthologous to human RPP30 (ribonuclease P/MRP subunit p30). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000025714	RNase_P_p30	PF01876	6.3e-62	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Rpp30-204	ENSMUST00000237251	1634	No protein	-
Rpp30-201	ENSMUST00000025714	1145	268aa	ENSMUSP00000025714
Rpp30-203	ENSMUST00000236197	584	No protein	-
Rpp30-205	ENSMUST00000237841	1871	No protein	-
Rpp30-202	ENSMUST00000235223	370	No protein	-

Gene Model

Click here to download ENSMUSG00000024800's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000024800's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000024800

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000024800

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000172	part_of ribonuclease MRP complex	1	ISO	Mus_musculus(10090)	Component
GO:0001682	involved_in tRNA 5-leader removal	1	ISO	Mus_musculus(10090)	Process
GO:0003723	enables RNA binding	1	IBA	Mus_musculus(10090)	Function
GO:0004526	contributes_to ribonuclease P activity	1	ISO	Mus_musculus(10090)	Function
GO:0005634	located_in nucleus	1	IEA	Mus_musculus(10090)	Component
GO:0005655	part_of nucleolar ribonuclease P complex	1	IBA	Mus_musculus(10090)	Component
GO:0006364	acts_upstream_of_or_within rRNA processing	1	IEA	Mus_musculus(10090)	Process
GO:0008033	involved_in tRNA processing	1	IBA	Mus_musculus(10090)	Process
GO:0030681	part_of multimeric ribonuclease P complex	1	ISO	Mus_musculus(10090)	Component
GO:0033204	enables ribonuclease P RNA binding	1	ISO	Mus_musculus(10090)	Function

Expression