RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000024181	Gene ID	68611	Accession	-
Symbol	Mrpl28	Alias	p15;L28mt;MAAT1;MRP-L28;1110015G04Rik	Full Name	mitochondrial ribosomal protein L28
Status	Confidence	Length	3114 bases	Strand	Plus strand
Position	17 : 26342474 - 26345587	RNA binding domain	Ribosomal_L28
Summary	Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000158366	Ribosomal_L28	PF00830	3.5e-08	1
ENSMUSP00000115369	Ribosomal_L28	PF00830	4.2e-08	1
ENSMUSP00000158545	Ribosomal_L28	PF00830	5.8e-08	1
ENSMUSP00000025014	Ribosomal_L28	PF00830	6.6e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Mrpl28-201	ENSMUST00000025014	1068	257aa	ENSMUSP00000025014
Mrpl28-205	ENSMUST00000236166	1047	250aa	ENSMUSP00000158545
Mrpl28-204	ENSMUST00000236040	1134	No protein	-
Mrpl28-206	ENSMUST00000237950	1046	177aa	ENSMUSP00000158366
Mrpl28-203	ENSMUST00000127647	1002	198aa	ENSMUSP00000115369
Mrpl28-202	ENSMUST00000123132	506	No protein	-

Gene Model

Click here to download ENSMUSG00000024181's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000024181's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000024181

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000024181

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003735	enables structural constituent of ribosome	1	IBA	Mus_musculus(10090)	Function
GO:0005739	located_in mitochondrion	2	HDA,ISO	Mus_musculus(10090)	Component
GO:0005743	located_in mitochondrial inner membrane	1	NAS	Mus_musculus(10090)	Component
GO:0005761	located_in mitochondrial ribosome	1	ISO	Mus_musculus(10090)	Component
GO:0005762	part_of mitochondrial large ribosomal subunit	3	IBA,ISO,NAS	Mus_musculus(10090)	Component
GO:0005829	located_in cytosol	1	ISO	Mus_musculus(10090)	Component
GO:0005840	located_in ribosome	1	IEA	Mus_musculus(10090)	Component
GO:0032543	involved_in mitochondrial translation	1	NAS	Mus_musculus(10090)	Process
GO:1990904	part_of ribonucleoprotein complex	1	IEA	Mus_musculus(10090)	Component

Expression