RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000022945	Gene ID	110749	Accession	-
Symbol	Chaf1b	Alias	CAF1;CAF1A;CAF1P60;CAF-Ip60;MPHOSPH7;CAF-Ip60;2600017H24Rik	Full Name	chromatin assembly factor 1, subunit B
Status	Confidence	Length	22215 bases	Strand	Plus strand
Position	16 : 93680789 - 93703003	RNA binding domain	eIF2A
Summary	Predicted to be involved in DNA replication-dependent chromatin assembly and nucleosome assembly. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in chromatin and nucleoplasm. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human CHAF1B (chromatin assembly factor 1 subunit B). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000023666	eIF2A	PF08662	1.4e-05	1
ENSMUSP00000113684	eIF2A	PF08662	1.4e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Chaf1b-201	ENSMUST00000023666	1922	572aa	ENSMUSP00000023666
Chaf1b-202	ENSMUST00000117099	1894	572aa	ENSMUSP00000113684
Chaf1b-204	ENSMUST00000124313	2828	No protein	-
Chaf1b-206	ENSMUST00000142316	719	79aa	ENSMUSP00000121034
Chaf1b-203	ENSMUST00000120586	484	96aa	ENSMUSP00000113420
Chaf1b-207	ENSMUST00000143006	428	34aa	ENSMUSP00000155864
Chaf1b-205	ENSMUST00000128316	611	No protein	-

Gene Model

Click here to download ENSMUSG00000022945's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000022945's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000022945

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000022945

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000785	part_of chromatin	1	ISO	Mus_musculus(10090)	Component
GO:0005515	enables protein binding	1	IPI	Mus_musculus(10090)	Function
GO:0005634	is_active_in nucleus	1	IBA	Mus_musculus(10090)	Component
GO:0005654	located_in nucleoplasm	1	ISO	Mus_musculus(10090)	Component
GO:0005737	located_in cytoplasm	1	IEA	Mus_musculus(10090)	Component
GO:0006260	acts_upstream_of_or_within DNA replication	1	IEA	Mus_musculus(10090)	Process
GO:0006281	acts_upstream_of_or_within DNA repair	1	IEA	Mus_musculus(10090)	Process
GO:0006334	involved_in nucleosome assembly	2	IBA,ISO	Mus_musculus(10090)	Process
GO:0006335	involved_in DNA replication-dependent chromatin assembly	1	ISO	Mus_musculus(10090)	Process
GO:0006974	acts_upstream_of_or_within DNA damage response	1	IEA	Mus_musculus(10090)	Process
GO:0007049	acts_upstream_of_or_within cell cycle	1	IEA	Mus_musculus(10090)	Process
GO:0032991	part_of protein-containing complex	1	ISO	Mus_musculus(10090)	Component
GO:0033186	part_of CAF-1 complex	2	IBA,ISO	Mus_musculus(10090)	Component

Expression