RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000012405	Gene ID	66480	Accession	-
Symbol	Rpl15	Alias	2510008H07Rik	Full Name	ribosomal protein L15
Status	Confidence	Length	3569 bases	Strand	Plus strand
Position	14 : 4198305 - 4201873	RNA binding domain	Ribosomal_L15e
Summary	Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in A band; cytosolic ribosome; and nucleus. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in cerebellum external granule cell layer; liver; neural retina; olfactory epithelium; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 12. Orthologous to human RPL15 (ribosomal protein L15). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000078388	Ribosomal_L15e	PF00827	1.3e-91	1
ENSMUSP00000079163	Ribosomal_L15e	PF00827	1.3e-91	1
ENSMUSP00000098362	Ribosomal_L15e	PF00827	1.3e-91	1
ENSMUSP00000108217	Ribosomal_L15e	PF00827	1.3e-91	1
ENSMUSP00000119852	Ribosomal_L15e	PF00827	4.8e-45	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Rpl15-205	ENSMUST00000147121	505	107aa	ENSMUSP00000119852
Rpl15-202	ENSMUST00000080281	1922	204aa	ENSMUSP00000079163
Rpl15-201	ENSMUST00000079419	883	204aa	ENSMUSP00000078388
Rpl15-203	ENSMUST00000100799	802	204aa	ENSMUSP00000098362
Rpl15-204	ENSMUST00000112598	802	204aa	ENSMUSP00000108217
Rpl15-206	ENSMUST00000224196	565	No protein	-

Gene Model

Click here to download ENSMUSG00000012405's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000012405's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000012405

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000012405

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0002181	involved_in cytoplasmic translation	2	IBA,NAS	Mus_musculus(10090)	Process
GO:0003723	enables RNA binding	1	IBA	Mus_musculus(10090)	Function
GO:0003735	enables structural constituent of ribosome	3	IBA,IDA,ISO	Mus_musculus(10090)	Function
GO:0005634	located_in nucleus	1	ISO	Mus_musculus(10090)	Component
GO:0005737	located_in cytoplasm	1	NAS	Mus_musculus(10090)	Component
GO:0005829	located_in cytosol	1	TAS	Mus_musculus(10090)	Component
GO:0005840	is_active_in ribosome	1	NAS	Mus_musculus(10090)	Component
GO:0006412	involved_in translation	1	IEA	Mus_musculus(10090)	Process
GO:0022625	part_of cytosolic large ribosomal subunit	4	IBA,IDA,IPI,ISO	Mus_musculus(10090)	Component
GO:0022626	located_in cytosolic ribosome	1	ISO	Mus_musculus(10090)	Component
GO:0031672	located_in A band	1	ISO	Mus_musculus(10090)	Component
GO:0045202	is_active_in synapse	3	EXP,IDA,NAS	Mus_musculus(10090)	Component
GO:0098793	is_active_in presynapse	1	NAS	Mus_musculus(10090)	Component
GO:0098794	is_active_in postsynapse	1	NAS	Mus_musculus(10090)	Component
GO:0140236	involved_in translation at presynapse	1	NAS	Mus_musculus(10090)	Process
GO:0140242	involved_in translation at postsynapse	1	NAS	Mus_musculus(10090)	Process
GO:1990904	part_of ribonucleoprotein complex	1	IEA	Mus_musculus(10090)	Component

Expression