RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMUSG00000003662	Gene ID	26371	Accession	-
Symbol	Ciao1	Alias	Wdr39	Full Name	cytosolic iron-sulfur protein assembly 1
Status	Confidence	Length	6879 bases	Strand	Minus strand
Position	2 : 127082858 - 127089736	RNA binding domain	eIF2A
Summary	Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be part of CIA complex and MMXD complex. Is expressed in several structures, including central nervous system; genitourinary system; liver; neural retina; and skin. Orthologous to human CIAO1 (cytosolic iron-sulfur assembly component 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMUSP00000134159	eIF2A	PF08662	0.00026	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Ciao1-201	ENSMUST00000003759	3075	339aa	ENSMUSP00000003759
Ciao1-204	ENSMUST00000174030	1109	233aa	ENSMUSP00000134189
Ciao1-202	ENSMUST00000143575	581	No protein	-
Ciao1-205	ENSMUST00000174863	531	176aa	ENSMUSP00000134159
Ciao1-203	ENSMUST00000172636	409	51aa	ENSMUSP00000134199

Gene Model

Click here to download ENSMUSG00000003662's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMUSG00000003662's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000003662

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMUSG00000003662

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003700	enables DNA-binding transcription factor activity	1	TAS	Mus_musculus(10090)	Function
GO:0005737	located_in cytoplasm	1	ISO	Mus_musculus(10090)	Component
GO:0006357	acts_upstream_of_or_within regulation of transcription by RNA polymerase II	1	TAS	Mus_musculus(10090)	Process
GO:0007059	acts_upstream_of_or_within chromosome segregation	1	IEA	Mus_musculus(10090)	Process
GO:0016226	involved_in iron-sulfur cluster assembly	2	IBA,ISO	Mus_musculus(10090)	Process
GO:0071817	part_of MMXD complex	1	ISO	Mus_musculus(10090)	Component
GO:0097361	part_of CIA complex	2	IBA,ISO	Mus_musculus(10090)	Component
GO:0097428	involved_in protein maturation by iron-sulfur cluster transfer	1	ISO	Mus_musculus(10090)	Process

Expression