RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSMSIG00000016777	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3263 bases	Strand	Minus strand
Position	QGOO01036735.1 : 320055 - 323317	RNA binding domain	Ribosomal_L27
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMSIP00000019764	Ribosomal_L27	PF01016	2.2e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSMSIT00000024951	399	132aa	ENSMSIP00000019764

Gene Model

Click here to download ENSMSIG00000016777's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMSIG00000016777's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMSIG00000016777

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	49.2424	40.9091	cercocebus_atys	ENSCATP00000019314	55.0847	45.7627
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	49.2424	40.9091	macaca_nemestrina	ENSMNEP00000004186	55.0847	45.7627
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	46.2121	38.6364	papio_anubis	ENSPANP00000044723	74.3902	62.1951
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	53.7879	46.2121	papio_anubis	ENSPANP00000058409	51.4493	44.2029
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	50	41.6667	mandrillus_leucophaeus	ENSMLEP00000025885	55.9322	46.6102
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	50.7576	41.6667	vulpes_vulpes	ENSVVUP00000006105	37.8531	31.0734
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	47.7273	43.1818	microcebus_murinus	ENSMICP00000040549	75.9036	68.6747
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	31.8182	28.0303	vicugna_pacos	ENSVPAP00000002056	50.6024	44.5783
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	46.2121	37.8788	cebus_imitator	ENSCCAP00000009391	69.3182	56.8182
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	37.8788	28.0303	lates_calcarifer	ENSLCAP00010053246	54.9451	40.6593
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	33.3333	27.2727	crocodylus_porosus	ENSCPRP00005003388	39.6396	32.4324
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	37.8788	27.2727	notechis_scutatus	ENSNSUP00000018168	43.8596	31.5789
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	30.303	24.2424	anas_platyrhynchos_platyrhynchos	ENSAPLP00000018681	48.1928	38.5542
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	37.8788	28.7879	serinus_canaria	ENSSCAP00000000461	36.7647	27.9412
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	39.3939	30.303	parus_major	ENSPMJP00000024942	42.623	32.7869
ENSMSIG00000016777	mus_spicilegus	ENSMSIP00000019764	36.3636	27.2727	sinocyclocheilus_grahami	ENSSGRP00000057380	56.4706	42.3529

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression