Description

Ensembl ID ENSMOCG00000000866 Gene ID 101994861 Accession -
Symbol Prpf40b Alias - Full Name pre-mRNA processing factor 40 homolog B
Status Confidence Length 22343 bases Strand Minus strand
Position 15 : 5398427 - 5420769 RNA binding domain FF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSMOCP00000001144 FF PF01846 6.7e-42 1
ENSMOCP00000001144 FF PF01846 6.7e-42 2
ENSMOCP00000001140 FF PF01846 7.3e-42 1
ENSMOCP00000001140 FF PF01846 7.3e-42 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Prpf40b-201 ENSMOCT00000001176 3177 874aa ENSMOCP00000001140
Prpf40b-202 ENSMOCT00000001180 2595 864aa ENSMOCP00000001144

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000938067.578953.1579microtus_ochrogasterENSMOCP0000000114073.455457.7803

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114063.7357.0938ornithorhynchus_anatinusENSOANP0000003586069.451462.2195
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114090.274685.4691sarcophilus_harrisiiENSSHAP0000002417784.747680.2363
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114084.668280.3204notamacropus_eugeniiENSMEUP0000000083787.677783.1754
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114040.045836.27choloepus_hoffmanniENSCHOP0000000427241.031737.163
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.338794.2792dasypus_novemcinctusENSDNOP0000003345589.861387.9402
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114078.375376.659erinaceus_europaeusENSEEUP0000000667688.730686.7876
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114063.272361.5561echinops_telfairiENSETEP0000001580064.678462.924
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.25495.4233callithrix_jacchusENSCJAP0000003908697.365495.5326
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.25495.9954cercocebus_atysENSCATP0000001710097.58996.3261
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.25495.9954macaca_fascicularisENSMFAP0000002160297.58996.3261
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.025295.7666macaca_mulattaENSMMUP0000005737595.067393.8341
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.139695.881macaca_nemestrinaENSMNEP0000001894495.179493.9462
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.25495.9954papio_anubisENSPANP0000000231497.58996.3261
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.139695.7666mandrillus_leucophaeusENSMLEP0000003972997.474296.0964
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.139695.4233gorilla_gorillaENSGGOP0000000155695.179493.4978
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.766693.9359pan_paniscusENSPPAP0000001034093.939492.1437
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114090.503488.5583pongo_abeliiENSPPYP0000000512785.32983.4951
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.25495.6522homo_sapiensENSP0000044807395.291593.722
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.368495.7666pan_troglodytesENSPTRP0000005023697.703896.0964
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.25494.9657canis_lupus_familiarisENSCAFP0084502684985.255883.2497
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114088.443985.6979vulpes_vulpesENSVVUP0000002977387.542584.8245
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114019.908518.1922ursus_americanusENSUAMP0000002080362.589957.1942
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.25494.8513ailuropoda_melanoleucaENSAMEP0000000101895.398493.0415
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.139694.7368mustela_putorius_furoENSMPUP0000001446797.362494.9541
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114086.727783.9817felis_catusENSFCAP0000004922683.849681.1947
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.796394.508panthera_leoENSPLOP0000001792495.485393.228
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.796394.3936panthera_pardusENSPPRP0000001682195.485393.1151
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.910894.1648tursiops_truncatusENSTTRP0000001119297.13394.3807
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.224393.4783delphinapterus_leucasENSDLEP0000002251597.113294.3418
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.796393.9359physeter_catodonENSPCTP0000501142294.736891.9373
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.652293.135loxodonta_africanaENSLAFP0000001230695.981693.4558
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.567593.7071balaenoptera_musculusENSBMSP0001002535594.512991.7133
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114091.647690.2746equus_asinusENSEASP0000500153994.569193.1523
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.139695.6522equus_caballusENSECAP0000001867193.194391.7673
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114081.121379.405procavia_capensisENSPCAP0000001248881.214279.496
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.109893.9359sus_scrofaENSSSCP0000000021596.885894.6944
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.109894.1648camelus_dromedariusENSCDRP0000500806279.470277.8619
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.652293.4783capra_hircusENSCHIP0000002852396.647494.4509
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.109893.7071bos_taurusENSBTAP0000005756787.591285.4015
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.453194.1648ovis_aries_rambouilletENSOARP0002000069796.674394.3807
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114092.105389.4737oryctolagus_cuniculusENSOCUP0000004406876.593774.4053
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114093.935990.5034ochotona_princepsENSOPRP0000000422194.043590.6071
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.796395.1945marmota_marmota_marmotaENSMMMP0000002638896.685795.0857
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114094.393692.4485urocitellus_parryiiENSUPAP0001001201294.718792.7669
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.995494.3936dipodomys_ordiiENSDORP0000000025096.436894.8276
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.970398.9703cricetulus_griseus_chok1gshdENSCGRP0000100499696.64896.648
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.970398.8558mesocricetus_auratusENSMAUP0000001206898.631798.5177
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.169397.4828mus_musculusENSMUSP0000011586998.281897.5945
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.054997.4828mus_caroliMGP_CAROLIEiJ_P003974798.167297.5945
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.054997.3684mus_spretusMGP_SPRETEiJ_P004158198.167297.48
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.054997.254mus_pahariMGP_PahariEiJ_P004309898.167297.3654
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.453194.508cavia_porcellusENSCPOP0000002221894.719192.809
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.169397.4828mus_spicilegusENSMSIP0000000339198.734298.0437
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.054997.3684rattus_norvegicusENSRNOP0000008066696.292195.618
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.652294.0503heterocephalus_glaber_femaleENSHGLP0000000563993.199691.6388
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114015.446215.4462octodon_degusENSODEP0000001477699.264799.2647
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114089.931485.4691vombatus_ursinusENSVURP0001000870188.017983.6506
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114092.448589.5881ursus_maritimusENSUMAP0000000897389.479586.711
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.567594.3936bos_grunniensENSBGRP0000000327794.512992.3852
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.681994.7368otolemur_garnettiiENSOGAP0000000458896.792794.8454
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.025295.3089microcebus_murinusENSMICP0000003190394.748693.0726
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114094.622492.3341bos_indicus_hybridENSBIXP0000503735489.308987.149
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.88193.9359chinchilla_lanigeraENSCLAP0000000229796.878694.9133
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114092.906291.0755tupaia_belangeriENSTBEP0000000627093.012691.1798
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.025295.4233aotus_nancymaaeENSANAP0000002429494.854693.2886
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114087.528682.7231phascolarctos_cinereusENSPCIP0000003636786.931882.1591
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.139695.5378saimiri_boliviensis_boliviensisENSSBOP0000001808697.250995.6472
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.681993.9359phocoena_sinusENSPSNP0000001368496.903794.1514
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114094.622491.4188monodon_monocerosENSMMNP0001501876576.716174.1187
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.025295.5378ictidomys_tridecemlineatusENSSTOP0000002906292.880691.4567
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114058.810156.6362sorex_araneusENSSARP0000001083166.322663.871
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114050.114449.0847sorex_araneusENSSARP0000001177096.263794.2857
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.567594.3936bison_bison_bisonENSBBBP0000001539494.512992.3852
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.681994.1648catagonus_wagneriENSCWAP0000002414594.51992.0582
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.910895.3089sciurus_vulgarisENSSVLP0000501978894.848893.2811
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.995494.2792rhinolophus_ferrumequinumENSRFEP0001001907594.269792.5843
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.766694.2792jaculus_jaculusENSJJAP0000001152697.212595.7027
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.139695.7666chlorocebus_sabaeusENSCSAP0000000236695.179493.8341
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.308992.7918myotis_lucifugusENSMLUP0000000582493.912191.4318
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.910895.5378rhinopithecus_roxellanaENSRROP0000002877394.955293.6099
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114094.164892.5629rhinopithecus_bietiENSRBIP0000001186092.471990.8989
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114076.544673.913nomascus_leucogenysENSNLEP0000002365891.769588.6145
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.338793.9359moschus_moschiferusENSMMSP0000002026896.559694.1514
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114093.478390.5034canis_lupus_dingoENSCAFP0002001706094.23391.2341
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114095.537894.2792carlito_syrichtaENSTSYP0000001250593.400492.17
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.025295.6522propithecus_coquereliENSPCOP0000002999194.854693.5123
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114097.025295.3089cebus_imitatorENSCCAP0000002472397.136395.4181
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.910895.7666nannospalax_galiliENSNGAP0000002058196.895.6571
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114094.736892.5629bos_mutusENSBMUP0000003140896.842194.6199
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114098.62798.0549peromyscus_maniculatus_bairdiiENSPEMP0000001703198.289697.7195
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114088.558385.8124panthera_tigris_altaicaENSPTIP0000001516495.910892.9368
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.796395.1945prolemur_simusENSPSMP0000002565794.630993.0649
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114092.562990.9611pteropus_vampyrusENSPVAP0000001497393.41891.8014
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114096.453194.0503neovison_visonENSNVIP0000000797389.206486.9841
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114046.796329.5195caenorhabditis_elegansZK1098.1a.156.491735.6354
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114055.148738.4439drosophila_melanogasterFBpp007733359.801541.6873
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114055.377640.8467ciona_intestinalisENSCINP0000001682659.386543.8037
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114073.455458.6957petromyzon_marinusENSPMAP0000000335772.297357.7703
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114045.537836.7277eptatretus_burgeriENSEBUP0000000554973.027558.8991
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114075.858163.3867latimeria_chalumnaeENSLACP0000002175974.161161.9687
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114077.803265.4462xenopus_tropicalisENSXETP0000007048972.727361.1765
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114066.132757.8947chrysemys_picta_belliiENSCPBP0000002778871.623362.7014
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114069.794161.3272crocodylus_porosusENSCPRP0000500266973.405564.5006
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114029.977126.3158sphenodon_punctatusENSSPUP0000002127079.878170.1219
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114055.835248.9703notechis_scutatusENSNSUP0000002528484.283273.9206
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114054.462248.0549pseudonaja_textilisENSPTXP0000000861681.646772.0412
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114055.49248.9703anolis_carolinensisENSACAP0000002678777.47668.3706
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114055.034345.0801erpetoichthys_calabaricusENSECRP0000001619368.033955.7284
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114054.233448.5126naja_najaENSNNAP0000001370683.597974.7795
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114014.759710.4119ciona_savignyiENSCSAVP0000001383667.539347.644
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114056.064149.4279podarcis_muralisENSPMRP0000003436983.050873.2203
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114064.187656.1785chelonoidis_abingdoniiENSCABP0000001202666.077757.8327
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114075.858166.9336gopherus_evgoodeiENSGEVP0000501347376.558967.552
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114068.993157.2082leptobrachium_leishanenseENSLLEP0000000686865.048553.9374
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114075.171664.6453salvator_merianaeENSSMRP0000001182374.659164.2045
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114064.187656.5217terrapene_carolina_triunguisENSTMTP0000003048771.283462.77
ENSMOCG00000000866microtus_ochrogasterENSMOCP0000000114030.77816.1327saccharomyces_cerevisiaeYKL012W46.140724.1852

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression