RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSMMUG00000054390	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	7591 bases	Strand	Plus strand
Position	12 : 118943151 - 118950741	RNA binding domain	Ribosomal_S27e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMMUP00000070750	Ribosomal_S27e	PF01667	1.1e-25	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSMMUT00000093228	5562	105aa	ENSMMUP00000070750

Gene Model

Click here to download ENSMMUG00000054390's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMMUG00000054390's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000023976	94.0476	92.8571	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000033519	92.8571	89.2857	macaca_mulatta	ENSMMUP00000070750	74.2857	71.4286

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	ornithorhynchus_anatinus	ENSOANP00000038462	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	erinaceus_europaeus	ENSEEUP00000014047	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	73.3333	71.4286	callithrix_jacchus	ENSCJAP00000054057	86.5169	84.2697
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	96.1905	96.1905	cercocebus_atys	ENSCATP00000013077	96.1905	96.1905
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	macaca_fascicularis	ENSMFAP00000007327	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	78.0952	78.0952	macaca_nemestrina	ENSMNEP00000004319	97.619	97.619
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	ovis_aries_rambouillet	ENSOARP00020003822	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	73.3333	73.3333	ovis_aries_rambouillet	ENSOARP00020021035	84.6154	84.6154
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	72.381	69.5238	mesocricetus_auratus	ENSMAUP00000008521	90.4762	86.9048
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	75.2381	mandrillus_leucophaeus	ENSMLEP00000004083	94.0476	94.0476
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	73.3333	pan_troglodytes	ENSPTRP00000081657	94.0476	91.6667
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	marmota_marmota_marmota	ENSMMMP00000019971	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	46.6667	46.6667	felis_catus	ENSFCAP00000053554	94.2308	94.2308
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	canis_lupus_familiaris	ENSCAFP00845022696	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	mus_spicilegus	ENSMSIP00000033205	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	vombatus_ursinus	ENSVURP00010021948	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	69.5238	68.5714	sus_scrofa	ENSSSCP00000078376	87.9518	86.747
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	71.4286	66.6667	urocitellus_parryii	ENSUPAP00010005781	89.2857	83.3333
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	otolemur_garnettii	ENSOGAP00000002751	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	70.4762	69.5238	jaculus_jaculus	ENSJJAP00000002704	89.1566	87.9518
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	72.381	67.619	camelus_dromedarius	ENSCDRP00005016876	90.4762	84.5238
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	73.3333	72.381	cricetulus_griseus_chok1gshd	ENSCGRP00001008038	91.6667	90.4762
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	73.3333	73.3333	cricetulus_griseus_chok1gshd	ENSCGRP00001004256	91.6667	91.6667
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	75.2381	papio_anubis	ENSPANP00000028333	50.3185	50.3185
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	oryctolagus_cuniculus	ENSOCUP00000010135	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	69.5238	69.5238	capra_hircus	ENSCHIP00000005956	80.2198	80.2198
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	73.3333	aotus_nancymaae	ENSANAP00000001832	94.0476	91.6667
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	75.2381	microtus_ochrogaster	ENSMOCP00000004677	94.0476	94.0476
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	monodon_monoceros	ENSMMNP00015001101	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	74.2857	74.2857	ictidomys_tridecemlineatus	ENSSTOP00000025336	92.8571	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	panthera_leo	ENSPLOP00000012495	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	sciurus_vulgaris	ENSSVLP00005014474	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	59.0476	57.1429	saimiri_boliviensis_boliviensis	ENSSBOP00000038217	87.3239	84.507
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	72.381	69.5238	propithecus_coquereli	ENSPCOP00000003515	91.5663	87.9518
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	microcebus_murinus	ENSMICP00000009421	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	71.4286	71.4286	phocoena_sinus	ENSPSNP00000025751	89.2857	89.2857
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	dipodomys_ordii	ENSDORP00000001490	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	nomascus_leucogenys	ENSNLEP00000032542	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	68.5714	66.6667	peromyscus_maniculatus_bairdii	ENSPEMP00000028925	80.8989	78.6517
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	68.5714	67.619	moschus_moschiferus	ENSMMSP00000006431	85.7143	84.5238
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	67.619	64.7619	moschus_moschiferus	ENSMMSP00000006442	77.1739	73.913
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	73.3333	72.381	octodon_degus	ENSODEP00000026752	91.6667	90.4762
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	72.381	72.381	octodon_degus	ENSODEP00000026448	71.6981	71.6981
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	73.3333	pan_paniscus	ENSPPAP00000003130	94.0476	91.6667
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	68.5714	65.7143	rhinolophus_ferrumequinum	ENSRFEP00010015341	85.7143	82.1429
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	73.3333	72.381	nannospalax_galili	ENSNGAP00000011417	91.6667	90.4762
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	69.5238	67.619	nannospalax_galili	ENSNGAP00000007024	80.2198	78.022
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	cebus_imitator	ENSCCAP00000002224	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	74.2857	72.381	rhinopithecus_roxellana	ENSRROP00000005886	92.8571	90.4762
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	74.2857	73.3333	rhinopithecus_roxellana	ENSRROP00000007087	93.9759	92.7711
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	92.381	91.4286	rhinopithecus_bieti	ENSRBIP00000029071	92.381	91.4286
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	42.8571	39.0476	eptatretus_burgeri	ENSEBUP00000007814	62.5	56.9444
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	xenopus_tropicalis	ENSXETP00000108945	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	chrysemys_picta_bellii	ENSCPBP00000035415	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	74.2857	71.4286	ciona_savignyi	ENSCSAVP00000008994	92.8571	89.2857
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	75.2381	74.2857	gopherus_evgoodei	ENSGEVP00005021584	94.0476	92.8571
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	63.8095	60	cyprinus_carpio_carpio	ENSCCRP00000160099	84.8101	79.7468
ENSMMUG00000054390	macaca_mulatta	ENSMMUP00000070750	40.9524	40.9524	struthio_camelus_australis	ENSSCUP00000010931	81.1321	81.1321

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression