RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSMMDG00005019151	Gene ID		Accession	-
Symbol	IPO13	Alias	-	Full Name	si:ch73-182a11.2
Status	Confidence	Length	11718 bases	Strand	Plus strand
Position	17 : 12663621 - 12675338	RNA binding domain	IBN_N , Xpo1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMMDP00005041490	IBN_N	PF03810	1.2e-11	1
ENSMMDP00005041490	Xpo1	PF08389	9.4e-25	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSMMDT00005042335	2811	936aa	ENSMMDP00005041490

Gene Model

Click here to download ENSMMDG00005019151's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMMDG00005019151's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005021003	81.8087	71.1019	myripristis_murdjan	ENSMMDP00005041490	84.0812	73.0769
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005046109	43.1016	24.5989	myripristis_murdjan	ENSMMDP00005041490	43.0556	24.5726

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	39.9573	19.6581	caenorhabditis_elegans	T16G12.6.1	39.4099	19.3888
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	51.3889	29.594	drosophila_melanogaster	FBpp0307575	49.5366	28.5273
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	57.3718	35.8974	ciona_intestinalis	ENSCINP00000003764	56.4669	35.3312
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	80.0214	67.4145	clupea_harengus	ENSCHAP00000047604	78.2654	65.9352
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	55.1282	47.2222	clupea_harengus	ENSCHAP00000051402	82.4281	70.607
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	78.953	63.5684	danio_rerio	ENSDARP00000127479	78.2011	62.963
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	79.0598	64.5299	carassius_auratus	ENSCARP00000083636	77.7311	63.4454
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	78.7393	63.0342	astyanax_mexicanus	ENSAMXP00000006477	77.2537	61.8449
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	71.9017	56.4103	ictalurus_punctatus	ENSIPUP00000015957	69.2387	54.321
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	77.2436	60.4701	electrophorus_electricus	ENSEEEP00000023749	75.1559	58.8358
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	85.5769	78.312	esox_lucius	ENSELUP00000001936	81.7347	74.7959
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	89.3162	82.3718	oncorhynchus_kisutch	ENSOKIP00005085475	85.4806	78.8344
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	89.4231	82.6923	oncorhynchus_mykiss	ENSOMYP00000040145	85.5828	79.1411
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	87.6068	81.4103	salmo_salar	ENSSSAP00000134286	82.1643	76.3527
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	87.9274	81.4103	salmo_trutta	ENSSTUP00000068232	79.4402	73.5521
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	83.6538	73.6111	gadus_morhua	ENSGMOP00000054902	80.4728	70.8119
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	88.5684	81.7308	fundulus_heteroclitus	ENSFHEP00000030429	85.5521	78.9474
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	88.3547	80.5556	poecilia_reticulata	ENSPREP00000007696	85.3457	77.8122
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	88.7821	81.0897	xiphophorus_maculatus	ENSXMAP00000019229	85.7585	78.3282
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	86.7521	78.6325	oryzias_latipes	ENSORLP00000012813	84.058	76.1905
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	91.453	86.2179	cyclopterus_lumpus	ENSCLMP00005017502	88.7047	83.6269
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	90.2778	84.6154	oreochromis_niloticus	ENSONIP00000078706	81.8006	76.6699
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	89.2094	83.9744	haplochromis_burtoni	ENSHBUP00000013347	87.2518	82.1317
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	90.812	85.3633	astatotilapia_calliptera	ENSACLP00000020207	87.8099	82.5413
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	92.6282	88.5684	sparus_aurata	ENSSAUP00010032541	89.1975	85.2881
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	90.5983	85.7906	lates_calcarifer	ENSLCAP00010003021	87.4227	82.7835
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	93.2692	88.4615	dicentrarchus_labrax	ENSDLAP00005032027	90.4663	85.8031
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	85.8974	77.6709	cyprinodon_variegatus	ENSCVAP00000024075	85.623	77.4228
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	88.8889	80.5556	takifugu_rubripes	ENSTRUP00000001901	86.3967	78.297
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	49.8932	46.4744	oryzias_melastigma	ENSOMEP00000026968	89.4636	83.3333
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	20.0855	17.5214	oryzias_melastigma	ENSOMEP00000007960	79.661	69.4915
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	80.0214	73.5043	neolamprologus_brichardi	ENSNBRP00000008694	85.5023	78.5388
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	90.3846	82.3718	kryptolebias_marmoratus	ENSKMAP00000008041	87.3967	79.6488
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	79.594	76.1752	seriola_dumerili	ENSSDUP00000009881	90.743	86.8453
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	78.312	62.7137	pygocentrus_nattereri	ENSPNAP00000012504	77.4841	62.0507
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	86.5385	78.8462	poecilia_formosa	ENSPFOP00000008023	85.8051	78.178
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	87.8205	80.4487	poecilia_latipinna	ENSPLAP00000023363	84.2213	77.1516
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	57.0513	34.6154	ciona_savignyi	ENSCSAVP00000002335	56.3886	34.2133
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	91.8803	85.8974	scophthalmus_maximus	ENSSMAP00000060110	88.1148	82.3771
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	92.4145	87.5	cottoperca_gobio	ENSCGOP00000034613	89.7303	84.9585
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	89.2094	83.7607	labrus_bergylta	ENSLBEP00000014740	88.6412	83.2272
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	88.8889	82.906	hucho_hucho	ENSHHUP00000033261	85.0716	79.3456
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	88.9957	83.9744	amphilophus_citrinellus	ENSACIP00000015199	86.4108	81.5353
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	91.7735	86.1111	gasterosteus_aculeatus	ENSGACP00000021433	88.4655	83.0072
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	92.8419	88.2479	acanthochromis_polyacanthus	ENSAPOP00000033667	89.9586	85.5072
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	89.5299	82.6923	oncorhynchus_tshawytscha	ENSOTSP00005069905	85.8607	79.3033
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	89.3162	83.7607	anabas_testudineus	ENSATEP00000060420	87.0833	81.6667
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	79.1667	64.4231	sinocyclocheilus_grahami	ENSSGRP00000032680	76.7876	62.487
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	79.1667	64.9573	sinocyclocheilus_grahami	ENSSGRP00000110083	77.8361	63.8655
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	87.9274	80.235	tetraodon_nigroviridis	ENSTNIP00000010677	85.285	77.8238
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	91.9872	87.1795	amphiprion_ocellaris	ENSAOCP00000019349	89.4081	84.7352
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	87.1795	79.1667	oryzias_javanicus	ENSOJAP00000009349	84.9116	77.1072
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	82.6923	74.8932	hippocampus_comes	ENSHCOP00000019714	86	77.8889
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	92.6282	87.8205	stegastes_partitus	ENSSPAP00000006446	89.4737	84.8297
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	91.0256	85.3633	maylandia_zebra	ENSMZEP00005012335	88.0165	82.5413
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	92.5214	87.0726	mastacembelus_armatus	ENSMAMP00000000467	88.8205	83.5897
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	90.7051	83.3333	betta_splendens	ENSBSLP00000024893	87.7066	80.5785
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	91.8803	87.1795	amphiprion_percula	ENSAPEP00000001824	89.3043	84.7352
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	87.2863	78.953	oryzias_sinensis	ENSOSIP00000031586	80.8111	73.0959
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	93.2692	89.1026	larimichthys_crocea	ENSLCRP00005013962	90.4663	86.4249
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	41.3462	20.2991	saccharomyces_cerevisiae	YGL016W	35.8002	17.5763
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	84.6154	76.3889	cynoglossus_semilaevis	ENSCSEP00000026074	83.4563	75.3425
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	92.8419	88.6752	seriola_lalandi_dorsalis	ENSSLDP00000029114	89.7727	85.7438
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	79.4872	64.9573	cyprinus_carpio_carpio	ENSCCRP00000013917	78.1513	63.8655
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	90.9188	85.3633	pundamilia_nyererei	ENSPNYP00000000912	87.9132	82.5413
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	75.9615	61.0043	denticeps_clupeoides	ENSDCDP00000003657	68.8953	55.3295
ENSMMDG00005019151	myripristis_murdjan	ENSMMDP00005041490	93.2692	88.7821	sander_lucioperca	ENSSLUP00000000349	90.186	85.8471

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression