RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSMMDG00005016012	Gene ID		Accession	-
Symbol	larp6b	Alias	-	Full Name	La ribonucleoprotein 6, translational regulator b
Status	Confidence	Length	2041 bases	Strand	Minus strand
Position	17 : 5079376 - 5081416	RNA binding domain	SUZ-C , La
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMMDP00005034015	SUZ-C	PF12901	2.7e-06	1
ENSMMDP00005034015	La	PF05383	2.8e-15	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
larp6b-201	ENSMMDT00005034759	1293	430aa	ENSMMDP00005034015

Gene Model

Click here to download ENSMMDG00005016012's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMMDG00005016012's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005042316	9.61539	4.71154	myripristis_murdjan	ENSMMDP00005034015	23.2558	11.3953
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005055938	26.0652	12.0301	myripristis_murdjan	ENSMMDP00005034015	24.186	11.1628
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005029521	24.7253	12.0879	myripristis_murdjan	ENSMMDP00005034015	10.4651	5.11628
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005052839	12.037	5.42328	myripristis_murdjan	ENSMMDP00005034015	21.1628	9.53488
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005044692	25.7554	17.1223	myripristis_murdjan	ENSMMDP00005034015	41.6279	27.6744
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005033173	20.9507	11.2676	myripristis_murdjan	ENSMMDP00005034015	27.6744	14.8837
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005031146	8.93345	4.64904	myripristis_murdjan	ENSMMDP00005034015	22.7907	11.8605
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005000318	11.1406	5.70292	myripristis_murdjan	ENSMMDP00005034015	19.5349	10
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005040612	10.8999	5.57668	myripristis_murdjan	ENSMMDP00005034015	20	10.2326

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	38.3721	21.8605	drosophila_melanogaster	FBpp0311633	19.0311	10.842
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	39.7674	25.1163	ciona_intestinalis	ENSCINP00000017569	34.898	22.0408
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	49.3023	37.2093	clupea_harengus	ENSCHAP00000061765	44.3515	33.4728
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.9767	35.3488	danio_rerio	ENSDARP00000019822	42.8875	32.2718
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.9767	35.814	carassius_auratus	ENSCARP00000028014	42.5263	32.4211
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.9767	36.0465	carassius_auratus	ENSCARP00000110477	42.5263	32.6316
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.0465	35.1163	carassius_auratus	ENSCARP00000013274	41.7722	31.8565
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	49.3023	37.2093	astyanax_mexicanus	ENSAMXP00000019518	40	30.1887
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.7442	36.2791	ictalurus_punctatus	ENSIPUP00000011147	42.766	33.1915
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.5116	35.814	electrophorus_electricus	ENSEEEP00000051379	42.735	32.906
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.9767	34.8837	esox_lucius	ENSELUP00000049355	43.1624	32.0513
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	48.1395	35.814	oncorhynchus_kisutch	ENSOKIP00005115779	50.9852	37.931
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	50	36.5116	oncorhynchus_mykiss	ENSOMYP00000039724	49.1991	35.9268
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	50	36.5116	salmo_salar	ENSSSAP00000159183	43.9673	32.1063
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	50.2326	36.9767	salmo_trutta	ENSSTUP00000044127	44.1718	32.5153
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	48.6047	36.0465	fundulus_heteroclitus	ENSFHEP00000009177	50.8516	37.7129
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	51.8605	37.6744	poecilia_reticulata	ENSPREP00000017526	54.9261	39.9015
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	50.9302	37.4419	xiphophorus_maculatus	ENSXMAP00000030376	58.4	42.9333
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	50.9302	38.1395	cyclopterus_lumpus	ENSCLMP00005044928	59.0296	44.2049
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	53.2558	38.8372	oreochromis_niloticus	ENSONIP00000070823	59.6354	43.4896
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	53.2558	38.3721	haplochromis_burtoni	ENSHBUP00000028525	56.6832	40.8416
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	53.0233	38.6047	astatotilapia_calliptera	ENSACLP00000014670	57	41.5
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	51.6279	36.9767	sparus_aurata	ENSSAUP00010067292	57.0694	40.874
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	54.4186	41.1628	lates_calcarifer	ENSLCAP00010036658	60.9375	46.0938
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	54.8837	41.1628	dicentrarchus_labrax	ENSDLAP00005025293	56.3246	42.2434
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	48.8372	34.186	cyprinodon_variegatus	ENSCVAP00000026529	54.2636	37.9845
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	53.2558	37.907	neolamprologus_brichardi	ENSNBRP00000016498	57.6826	41.0579
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	45.3488	33.4884	seriola_dumerili	ENSSDUP00000013549	59.4512	43.9024
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	48.1395	36.7442	pygocentrus_nattereri	ENSPNAP00000017580	43.125	32.9167
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	29.3023	22.093	poecilia_formosa	ENSPFOP00000027279	76.3636	57.5758
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	50.6977	36.9767	poecilia_latipinna	ENSPLAP00000003601	60.221	43.9227
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	29.3023	19.3023	ciona_savignyi	ENSCSAVP00000019977	45.6522	30.0725
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	56.7442	42.093	labrus_bergylta	ENSLBEP00000021446	56.6125	41.9954
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	48.6047	35.5814	hucho_hucho	ENSHHUP00000059112	42.1371	30.8468
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	52.5581	40.2326	amphilophus_citrinellus	ENSACIP00000010657	53.8095	41.1905
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	48.8372	35.5814	acanthochromis_polyacanthus	ENSAPOP00000022420	58.3333	42.5
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	50	36.9767	oncorhynchus_tshawytscha	ENSOTSP00005036589	44.1478	32.6489
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	52.5581	39.5349	anabas_testudineus	ENSATEP00000030734	58.5492	44.0415
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	47.2093	35.814	sinocyclocheilus_grahami	ENSSGRP00000019800	42.5577	32.2851
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	37.6744	27.907	sinocyclocheilus_grahami	ENSSGRP00000086341	38.5714	28.5714
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	52.5581	38.1395	amphiprion_ocellaris	ENSAOCP00000001608	57.3604	41.6244
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.7442	34.4186	nothobranchius_furzeri	ENSNFUP00015052888	54.4715	40.1084
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	41.8605	30.2326	oryzias_javanicus	ENSOJAP00000019330	53.5714	38.6905
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	51.1628	40	stegastes_partitus	ENSSPAP00000018980	52.6316	41.1483
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	52.7907	38.6047	maylandia_zebra	ENSMZEP00005032750	56.75	41.5
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.9767	34.8837	scleropages_formosus	ENSSFOP00015058904	42.437	31.5126
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	54.4186	39.5349	mastacembelus_armatus	ENSMAMP00000008097	59.0909	42.9293
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	53.0233	38.1395	amphiprion_percula	ENSAPEP00000032031	57.2864	41.206
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	45.3488	34.6512	oryzias_sinensis	ENSOSIP00000038996	48.5075	37.0647
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	53.9535	39.3023	larimichthys_crocea	ENSLCRP00005003771	60.1036	43.7824
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	52.7907	40	seriola_lalandi_dorsalis	ENSSLDP00000021903	52.9138	40.0932
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.2791	35.5814	cyprinus_carpio_carpio	ENSCCRP00000129596	41.8947	32.2105
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	46.0465	35.3488	cyprinus_carpio_carpio	ENSCCRP00000079602	42.1277	32.3404
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	52.093	37.907	pundamilia_nyererei	ENSPNYP00000009254	53.4606	38.9021
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	48.8372	36.2791	paramormyrops_kingsleyae	ENSPKIP00000012048	43.5685	32.3651
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	49.5349	36.9767	denticeps_clupeoides	ENSDCDP00000035024	44.8421	33.4737
ENSMMDG00005016012	myripristis_murdjan	ENSMMDP00005034015	54.8837	41.3953	sander_lucioperca	ENSSLUP00000049699	59.8985	45.1777

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression