RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSMLUG00000010575	Gene ID	102439922	Accession	-
Symbol		Alias	-	Full Name	leucine rich pentatricopeptide repeat containing
Status	Confidence	Length	87270 bases	Strand	Plus strand
Position	GL429773 : 14773322 - 14860591	RNA binding domain	PPR_3 , PPR_long , PPR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMLUP00000009670	PPR_3	PF13812	2.9e-28	1
ENSMLUP00000009670	PPR_3	PF13812	2.9e-28	2
ENSMLUP00000009670	PPR_3	PF13812	2.9e-28	3
ENSMLUP00000009670	PPR_3	PF13812	2.9e-28	4
ENSMLUP00000009670	PPR_long	PF17177	4.2e-24	5
ENSMLUP00000009670	PPR	PF01535	2.8e-30	6
ENSMLUP00000009670	PPR	PF01535	2.8e-30	7
ENSMLUP00000009670	PPR	PF01535	2.8e-30	8
ENSMLUP00000009670	PPR	PF01535	2.8e-30	9

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSMLUT00000010610	4188	1395aa	ENSMLUP00000009670

Gene Model

Click here to download ENSMLUG00000010575's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMLUG00000010575's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMLUG00000010575

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	73.9785	68.3154	choloepus_hoffmanni	ENSCHOP00000003231	74.4052	68.7094
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	89.6057	80.8602	dasypus_novemcinctus	ENSDNOP00000009798	89.8634	81.0927
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	59.3548	49.9642	dasypus_novemcinctus	ENSDNOP00000020662	77.7465	65.446
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	63.5125	55.914	erinaceus_europaeus	ENSEEUP00000011323	68.8958	60.6532
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	89.7491	81.0036	echinops_telfairi	ENSETEP00000005410	89.878	81.1199
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	90.466	82.1505	cercocebus_atys	ENSCATP00000003773	86.3792	78.4394
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	90.1792	82.1505	macaca_nemestrina	ENSMNEP00000015080	90.0501	82.0329
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	90.9677	84.0143	mustela_putorius_furo	ENSMPUP00000011706	90.8375	83.8941
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	89.6774	84.2294	tursiops_truncatus	ENSTTRP00000006060	89.8062	84.3503
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	86.7383	77.276	loxodonta_africana	ENSLAFP00000019681	86.3669	76.945
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	64.086	58.2796	procavia_capensis	ENSPCAP00000001447	65.0655	59.1703
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	92.9032	86.3082	capra_hircus	ENSCHIP00000022836	93.1704	86.5564
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	77.3477	69.7491	ochotona_princeps	ENSOPRP00000015336	77.9624	70.3035
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	87.8853	77.7061	cricetulus_griseus_chok1gshd	ENSCGRP00001015743	88.0747	77.8736
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	78.0645	69.3907	cavia_porcellus	ENSCPOP00000000178	90.5237	80.4655
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	83.3692	78.0645	vicugna_pacos	ENSVPAP00000008367	86.7263	81.2081
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	88.172	78.9964	chinchilla_lanigera	ENSCLAP00000007399	88.1089	78.9398
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	89.4624	81.362	otolemur_garnettii	ENSOGAP00000011476	89.5908	81.4788
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	72.1147	62.8674	sorex_araneus	ENSSARP00000000394	85.617	74.6383
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	88.8172	80.4301	nomascus_leucogenys	ENSNLEP00000020435	89.8477	81.3633
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	90.2509	82.3656	chlorocebus_sabaeus	ENSCSAP00000009186	90.0572	82.1888
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	91.6846	84.4444	ictidomys_tridecemlineatus	ENSSTOP00000029316	89.2533	82.2052
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	91.1111	85.3047	panthera_tigris_altaica	ENSPTIP00000000544	91.1765	85.3659
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	89.4624	81.0036	microtus_ochrogaster	ENSMOCP00000006424	89.6552	81.1782
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	90.1792	85.5197	pteropus_vampyrus	ENSPVAP00000001898	90.2439	85.5811
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	62.0789	42.8674	petromyzon_marinus	ENSPMAP00000002368	65.9056	45.5099
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	16.7742	11.8996	eptatretus_burgeri	ENSEBUP00000025786	60.4651	42.8941
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	77.1326	61.9355	latimeria_chalumnae	ENSLACP00000015933	75.1922	60.3774
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	75.914	58.7814	lepisosteus_oculatus	ENSLOCP00000020256	71.8941	55.6687
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	69.9642	50.681	danio_rerio	ENSDARP00000111776	66.8036	48.3915
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	68.6738	51.0394	fundulus_heteroclitus	ENSFHEP00000017838	67.4173	50.1056
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	69.2473	51.3262	xiphophorus_maculatus	ENSXMAP00000018156	68.2686	50.6007
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	67.3118	49.2473	oryzias_latipes	ENSORLP00000005797	65.299	47.7747
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	66.0932	48.4588	astatotilapia_calliptera	ENSACLP00000035182	70.4893	51.682
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	49.6057	39.7133	pelodiscus_sinensis	ENSPSIP00000007632	79.7235	63.8249
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	11.828	10.2509	pelodiscus_sinensis	ENSPSIP00000017651	70.5128	61.1111
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	70.6093	51.828	cyprinodon_variegatus	ENSCVAP00000026988	69.3174	50.8797
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	24.8746	18.4229	oryzias_melastigma	ENSOMEP00000028638	67.5097	50
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	63.2975	46.7383	neolamprologus_brichardi	ENSNBRP00000017258	73.278	54.1079
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	69.319	50.7527	poecilia_formosa	ENSPFOP00000011667	68.4844	50.1416
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	25.0896	11.1828	saccharomyces_cerevisiae	YLR067C	36.2694	16.1658
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	71.1828	52.043	maylandia_zebra	ENSMZEP00005036721	69.392	50.7338
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	68.6738	51.1828	tetraodon_nigroviridis	ENSTNIP00000010279	69.4706	51.7766
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	67.5269	49.2473	amphilophus_citrinellus	ENSACIP00000012395	70.1937	51.1922
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	66.6667	48.6021	pundamilia_nyererei	ENSPNYP00000001107	69.2996	50.5216
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	68.1004	49.2473	amphiprion_percula	ENSAPEP00000004420	68.9405	49.8549
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	69.8925	51.3979	gasterosteus_aculeatus	ENSGACP00000014169	69.9928	51.4716
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	68.6021	49.1039	stegastes_partitus	ENSSPAP00000000169	66.3662	47.5035
ENSMLUG00000010575	myotis_lucifugus	ENSMLUP00000009670	71.6129	52.1147	amphiprion_ocellaris	ENSAOCP00000002732	69.909	50.8747

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression