Description

Ensembl ID ENSMCSG00000000840 Gene ID Accession -
Symbol Alias - Full Name leucine rich pentatricopeptide repeat containing
Status Confidence Length 74264 bases Strand Plus strand
Position 3 : 84273352 - 84347615 RNA binding domain PPR_3 , PPR_long , PPR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSMCSP00000001602 PPR_3 PF13812 2.1e-27 1
ENSMCSP00000001602 PPR_3 PF13812 2.1e-27 2
ENSMCSP00000001602 PPR_3 PF13812 2.1e-27 3
ENSMCSP00000001602 PPR_long PF17177 8.5e-21 4
ENSMCSP00000001602 PPR PF01535 1.4e-26 5
ENSMCSP00000001602 PPR PF01535 1.4e-26 6
ENSMCSP00000001602 PPR PF01535 1.4e-26 7
ENSMCSP00000001602 PPR PF01535 1.4e-26 8
ENSMCSP00000001639 PPR_3 PF13812 2.7e-26 1
ENSMCSP00000001639 PPR_3 PF13812 2.7e-26 2
ENSMCSP00000001639 PPR_3 PF13812 2.7e-26 3
ENSMCSP00000001639 PPR_long PF17177 2e-20 4
ENSMCSP00000001639 PPR PF01535 5e-28 5
ENSMCSP00000001639 PPR PF01535 5e-28 6
ENSMCSP00000001639 PPR PF01535 5e-28 7
ENSMCSP00000001639 PPR PF01535 5e-28 8
ENSMCSP00000001515 PPR_3 PF13812 6.5e-26 1
ENSMCSP00000001515 PPR_3 PF13812 6.5e-26 2
ENSMCSP00000001515 PPR_3 PF13812 6.5e-26 3
ENSMCSP00000001515 PPR_long PF17177 1.1e-17 4
ENSMCSP00000001515 PPR PF01535 3.7e-27 5
ENSMCSP00000001515 PPR PF01535 3.7e-27 6
ENSMCSP00000001515 PPR PF01535 3.7e-27 7
ENSMCSP00000001515 PPR PF01535 3.7e-27 8
ENSMCSP00000001556 PPR_3 PF13812 9.8e-26 1
ENSMCSP00000001556 PPR_3 PF13812 9.8e-26 2
ENSMCSP00000001556 PPR_3 PF13812 9.8e-26 3
ENSMCSP00000001556 PPR_long PF17177 3.6e-21 4
ENSMCSP00000001556 PPR PF01535 3.6e-27 5
ENSMCSP00000001556 PPR PF01535 3.6e-27 6
ENSMCSP00000001556 PPR PF01535 3.6e-27 7
ENSMCSP00000001556 PPR PF01535 3.6e-27 8

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSMCST00000001550 3939 1312aa ENSMCSP00000001515
- ENSMCST00000001592 3585 1194aa ENSMCSP00000001556
- ENSMCST00000001640 3636 1211aa ENSMCSP00000001602
- ENSMCST00000001680 3797 1259aa ENSMCSP00000001639

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMCSG00000000840

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSMCSG00000000840

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression